Brain region specific mapping taxonomy files

[siennasage18]

Hi there! As it says in the mapping_cells.md file, I'm filing this to see if it is possible to get allen brain atlas taxonomy mapping files that are not currently available/supported by the online tool. I have a dataset of mouse single cell hippocampus sequencing that I'd like to annotate specifically to the ABA mouse hippocampus annotated cells (from the HPF/hippocampus regions) instead of the whole mouse brain. Are these files something that exists/could be easily generated and shared?

Thanks for your help!
Sienna

If you are an internal Allen Institute user and just want to map to one of the taxonomies currently supported by the MapMyCells online app, email Scott Daniel, and he can provide you with the appropriate files. If you are an external user and want to map to one of the MapMyCells-supported taxonomies and the online MapMyCells app is for some reason insufficient for your purposes, please file an issue on this repository and we can discuss how to get you the relevant files.