modules.json

{
    "name": "nf-core/mycosnp",
    "homePage": "https://github.com/nf-core/mycosnp",
    "repos": {
        "nf-core/modules": {
            "bcftools/consensus": {
                "git_sha": "e20e57f90b6787ac9a010a980cf6ea98bd990046"
            },
            "bcftools/index": {
                "git_sha": "e20e57f90b6787ac9a010a980cf6ea98bd990046"
            },
            "bcftools/query": {
                "git_sha": "e20e57f90b6787ac9a010a980cf6ea98bd990046"
            },
            "bcftools/view": {
                "git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
            },
            "bedtools/maskfasta": {
                "git_sha": "e20e57f90b6787ac9a010a980cf6ea98bd990046"
            },
            "bwa/index": {
                "git_sha": "e20e57f90b6787ac9a010a980cf6ea98bd990046"
            },
            "bwa/mem": {
                "git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
            },
            "custom/dumpsoftwareversions": {
                "git_sha": "20d8250d9f39ddb05dfb437603aaf99b5c0b2b41"
            },
            "faqcs": {
                "git_sha": "2cd502a236aec1a1eecbe1f9189af3414efbf1d8"
            },
            "fastqc": {
                "git_sha": "9d0cad583b9a71a6509b754fdf589cbfbed08961"
            },
            "fasttree": {
                "git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
            },
            "gatk4/combinegvcfs": {
                "git_sha": "a25423dbb974e2e69268b5cdbc12e5bc1558e053"
            },
            "gatk4/genotypegvcfs": {
                "git_sha": "e20e57f90b6787ac9a010a980cf6ea98bd990046"
            },
            "gatk4/haplotypecaller": {
                "git_sha": "e20e57f90b6787ac9a010a980cf6ea98bd990046"
            },
            "gatk4/selectvariants": {
                "git_sha": "640031762334fd1d534d667c2e1a982c5513a7aa"
            },
            "gatk4/variantfiltration": {
                "git_sha": "e20e57f90b6787ac9a010a980cf6ea98bd990046"
            },
            "iqtree": {
                "git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
            },
            "multiqc": {
                "git_sha": "20d8250d9f39ddb05dfb437603aaf99b5c0b2b41"
            },
            "mummer": {
                "git_sha": "e20e57f90b6787ac9a010a980cf6ea98bd990046"
            },
            "nucmer": {
                "git_sha": "e20e57f90b6787ac9a010a980cf6ea98bd990046"
            },
            "picard/addorreplacereadgroups": {
                "git_sha": "a0d91e4a93daab335e8dbae31b345188c120e0a0"
            },
            "picard/cleansam": {
                "git_sha": "8a20253f4028133b589c2c169aaa68a5a7fe848d"
            },
            "picard/createsequencedictionary": {
                "git_sha": "62e5d1f0b38367d628e6b4c32b45d462f2c0b325"
            },
            "picard/fixmateinformation": {
                "git_sha": "f655e5dea2e25f403e23fb6dfdc33cc538666769"
            },
            "picard/markduplicates": {
                "git_sha": "e20e57f90b6787ac9a010a980cf6ea98bd990046"
            },
            "qualimap/bamqc": {
                "git_sha": "e20e57f90b6787ac9a010a980cf6ea98bd990046"
            },
            "rapidnj": {
                "git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
            },
            "raxmlng": {
                "git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
            },
            "samtools/faidx": {
                "git_sha": "e20e57f90b6787ac9a010a980cf6ea98bd990046"
            },
            "samtools/flagstat": {
                "git_sha": "1ad73f1b2abdea9398680d6d20014838135c9a35"
            },
            "samtools/idxstats": {
                "git_sha": "1ad73f1b2abdea9398680d6d20014838135c9a35"
            },
            "samtools/index": {
                "git_sha": "e20e57f90b6787ac9a010a980cf6ea98bd990046"
            },
            "samtools/sort": {
                "git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
            },
            "samtools/stats": {
                "git_sha": "1ad73f1b2abdea9398680d6d20014838135c9a35"
            },
            "samtools/view": {
                "git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
            },
            "seqkit/pair": {
                "git_sha": "4c59984d7bcc772598ba44fb8289051352c7a6c6"
            },
            "seqkit/replace": {
                "git_sha": "24f0bdd14ec32e0114aa6ee5337ddbd490ffd570"
            },
            "seqtk/rename": {
                "git_sha": "a69faefee8ff63565629a2b6dfc40e08f4690b80"
            },
            "seqtk/sample": {
                "git_sha": "e20e57f90b6787ac9a010a980cf6ea98bd990046"
            },
            "seqtk/seq": {
                "git_sha": "1016c9bd1a7b23e31b8215b8c33095e733080735"
            },
            "snpdists": {
                "git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
            }
        }
    }
}