From 12eff9f1e14ac21c53b153a3fd69c3c72e08e1ad Mon Sep 17 00:00:00 2001 From: Cal Hays Date: Mon, 18 Dec 2023 21:35:34 +0000 Subject: [PATCH] docs: use jupyter-book for docgen --- docs/.gitignore | 2 + docs/Makefile | 20 - docs/_config.yml | 44 + docs/_toc.yml | 10 + docs/api.rst | 8 + docs/intro.md | 11 + docs/logo.png | Bin 0 -> 9854 bytes docs/make.bat | 35 - docs/markdown-notebooks.md | 53 + docs/markdown.md | 55 + docs/notebooks.ipynb | 122 ++ docs/poetry.lock | 2384 +++++++++++++++++++++ docs/pyproject.toml | 16 + docs/references.bib | 56 + docs/requirements.txt | 3 + docs/source/_static/.gitkeep | 0 docs/source/changelog.md | 2 - docs/source/conf.py | 56 - docs/source/contributing.md | 2 - docs/source/index.md | 20 - docs/source/installation.md | 8 - docs/source/usage.md | 9 - mathpad/core/_generate_units_py.py | 11 +- mathpad/core/constants.py | 3 + mathpad/core/units.py | 315 +-- poetry.lock | 3150 +++++++++++++++++----------- pyproject.toml | 3 + 27 files changed, 4713 insertions(+), 1685 deletions(-) create mode 100644 docs/.gitignore delete mode 100644 docs/Makefile create mode 100644 docs/_config.yml create mode 100644 docs/_toc.yml create mode 100644 docs/api.rst create mode 100644 docs/intro.md create mode 100644 docs/logo.png delete mode 100644 docs/make.bat create mode 100644 docs/markdown-notebooks.md create mode 100644 docs/markdown.md create mode 100644 docs/notebooks.ipynb create mode 100644 docs/poetry.lock create mode 100644 docs/pyproject.toml create mode 100644 docs/references.bib create mode 100644 docs/requirements.txt delete mode 100644 docs/source/_static/.gitkeep delete mode 100644 docs/source/changelog.md delete mode 100644 docs/source/conf.py delete mode 100644 docs/source/contributing.md delete mode 100644 docs/source/index.md delete mode 100644 docs/source/installation.md delete mode 100644 docs/source/usage.md create mode 100644 mathpad/core/constants.py diff --git a/docs/.gitignore b/docs/.gitignore new file mode 100644 index 0000000..0aec095 --- /dev/null +++ b/docs/.gitignore @@ -0,0 +1,2 @@ +_build +_autosummary \ No newline at end of file diff --git a/docs/Makefile b/docs/Makefile deleted file mode 100644 index f19755b..0000000 --- a/docs/Makefile +++ /dev/null @@ -1,20 +0,0 @@ -# Minimal makefile for Sphinx documentation -# - -# You can set these variables from the command line, and also -# from the environment for the first two. -SPHINXOPTS ?= -SPHINXBUILD ?= sphinx-build -SOURCEDIR = source -BUILDDIR = build - -# Put it first so that "make" without argument is like "make help". -help: - @$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) - -.PHONY: help Makefile - -# Catch-all target: route all unknown targets to Sphinx using the new -# "make mode" option. $(O) is meant as a shortcut for $(SPHINXOPTS). -%: Makefile - $(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) diff --git a/docs/_config.yml b/docs/_config.yml new file mode 100644 index 0000000..8ec61a1 --- /dev/null +++ b/docs/_config.yml @@ -0,0 +1,44 @@ +# Book settings +# Learn more at https://jupyterbook.org/customize/config.html + +title: My sample book +author: The Jupyter Book Community +logo: logo.png + +# Force re-execution of notebooks on each build. +# See https://jupyterbook.org/content/execute.html +execute: + execute_notebooks: force + +# Define the name of the latex output file for PDF builds +latex: + latex_documents: + targetname: book.tex + +# Add a bibtex file so that we can create citations +bibtex_bibfiles: + - references.bib + +# Information about where the book exists on the web +repository: + url: https://github.com/executablebooks/jupyter-book # Online location of your book + path_to_book: . # Optional path to your book, relative to the repository root + branch: master # Which branch of the repository should be used when creating links (optional) + +# Add GitHub buttons to your book +# See https://jupyterbook.org/customize/config.html#add-a-link-to-your-repository +html: + use_issues_button: true + use_repository_button: true + +# https://jupyterbook.org/en/stable/advanced/developers.html#api-reference-from-docstrings +sphinx: + extra_extensions: + - sphinx.ext.autodoc + - sphinx.ext.napoleon + - sphinx.ext.viewcode + - sphinx.ext.autosummary + - sphinx_autodoc_typehints + config: + add_module_names: False + autosummary_generate: True diff --git a/docs/_toc.yml b/docs/_toc.yml new file mode 100644 index 0000000..3102795 --- /dev/null +++ b/docs/_toc.yml @@ -0,0 +1,10 @@ +# Table of contents +# Learn more at https://jupyterbook.org/customize/toc.html + +format: jb-book +root: intro +chapters: +- file: api.rst +- file: markdown +- file: notebooks +- file: markdown-notebooks \ No newline at end of file diff --git a/docs/api.rst b/docs/api.rst new file mode 100644 index 0000000..fd98c5d --- /dev/null +++ b/docs/api.rst @@ -0,0 +1,8 @@ +API documentation +================= + +.. autosummary:: + :toctree: _autosummary + :recursive: + + mathpad \ No newline at end of file diff --git a/docs/intro.md b/docs/intro.md new file mode 100644 index 0000000..f8cdc73 --- /dev/null +++ b/docs/intro.md @@ -0,0 +1,11 @@ +# Welcome to your Jupyter Book + +This is a small sample book to give you a feel for how book content is +structured. +It shows off a few of the major file types, as well as some sample content. +It does not go in-depth into any particular topic - check out [the Jupyter Book documentation](https://jupyterbook.org) for more information. + +Check out the content pages bundled with this sample book to see more. + +```{tableofcontents} +``` diff --git a/docs/logo.png b/docs/logo.png new file mode 100644 index 0000000000000000000000000000000000000000..06d56f40c838b64eb048a63e036125964a069a3a GIT binary patch literal 9854 zcmcJ#_ghoX7cGn*K?4W`P^xr9dX-2=s)7_L0g)Pd2}GoYu8}Goq=uqY=^(vJ3q7D9 zgx&ncihTY58>yQhyHVAq6+lGO~MVagOauq5m9v<`6Yyea8LU7g^33d5#6JIpIaLG 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Make sure you have Sphinx - echo.installed, then set the SPHINXBUILD environment variable to point - echo.to the full path of the 'sphinx-build' executable. Alternatively you - echo.may add the Sphinx directory to PATH. - echo. - echo.If you don't have Sphinx installed, grab it from - echo.http://sphinx-doc.org/ - exit /b 1 -) - -%SPHINXBUILD% -M %1 %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% %O% -goto end - -:help -%SPHINXBUILD% -M help %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% %O% - -:end -popd diff --git a/docs/markdown-notebooks.md b/docs/markdown-notebooks.md new file mode 100644 index 0000000..a057a32 --- /dev/null +++ b/docs/markdown-notebooks.md @@ -0,0 +1,53 @@ +--- +jupytext: + formats: md:myst + text_representation: + extension: .md + format_name: myst + format_version: 0.13 + jupytext_version: 1.11.5 +kernelspec: + display_name: Python 3 + language: python + name: python3 +--- + +# Notebooks with MyST Markdown + +Jupyter Book also lets you write text-based notebooks using MyST Markdown. +See [the Notebooks with MyST Markdown documentation](https://jupyterbook.org/file-types/myst-notebooks.html) for more detailed instructions. +This page shows off a notebook written in MyST Markdown. + +## An example cell + +With MyST Markdown, you can define code cells with a directive like so: + +```{code-cell} +print(2 + 2) +``` + +When your book is built, the contents of any `{code-cell}` blocks will be +executed with your default Jupyter kernel, and their outputs will be displayed +in-line with the rest of your content. + +```{seealso} +Jupyter Book uses [Jupytext](https://jupytext.readthedocs.io/en/latest/) to convert text-based files to notebooks, and can support [many other text-based notebook files](https://jupyterbook.org/file-types/jupytext.html). +``` + +## Create a notebook with MyST Markdown + +MyST Markdown notebooks are defined by two things: + +1. YAML metadata that is needed to understand if / how it should convert text files to notebooks (including information about the kernel needed). + See the YAML at the top of this page for example. +2. The presence of `{code-cell}` directives, which will be executed with your book. + +That's all that is needed to get started! + +## Quickly add YAML metadata for MyST Notebooks + +If you have a markdown file and you'd like to quickly add YAML metadata to it, so that Jupyter Book will treat it as a MyST Markdown Notebook, run the following command: + +``` +jupyter-book myst init path/to/markdownfile.md +``` diff --git a/docs/markdown.md b/docs/markdown.md new file mode 100644 index 0000000..0ddaab3 --- /dev/null +++ b/docs/markdown.md @@ -0,0 +1,55 @@ +# Markdown Files + +Whether you write your book's content in Jupyter Notebooks (`.ipynb`) or +in regular markdown files (`.md`), you'll write in the same flavor of markdown +called **MyST Markdown**. +This is a simple file to help you get started and show off some syntax. + +## What is MyST? + +MyST stands for "Markedly Structured Text". It +is a slight variation on a flavor of markdown called "CommonMark" markdown, +with small syntax extensions to allow you to write **roles** and **directives** +in the Sphinx ecosystem. + +For more about MyST, see [the MyST Markdown Overview](https://jupyterbook.org/content/myst.html). + +## Sample Roles and Directives + +Roles and directives are two of the most powerful tools in Jupyter Book. They +are kind of like functions, but written in a markup language. They both +serve a similar purpose, but **roles are written in one line**, whereas +**directives span many lines**. They both accept different kinds of inputs, +and what they do with those inputs depends on the specific role or directive +that is being called. + +Here is a "note" directive: + +```{note} +Here is a note +``` + +It will be rendered in a special box when you build your book. + +Here is an inline directive to refer to a document: {doc}`markdown-notebooks`. + + +## Citations + +You can also cite references that are stored in a `bibtex` file. For example, +the following syntax: `` {cite}`holdgraf_evidence_2014` `` will render like +this: {cite}`holdgraf_evidence_2014`. + +Moreover, you can insert a bibliography into your page with this syntax: +The `{bibliography}` directive must be used for all the `{cite}` roles to +render properly. +For example, if the references for your book are stored in `references.bib`, +then the bibliography is inserted with: + +```{bibliography} +``` + +## Learn more + +This is just a simple starter to get you started. +You can learn a lot more at [jupyterbook.org](https://jupyterbook.org). diff --git a/docs/notebooks.ipynb b/docs/notebooks.ipynb new file mode 100644 index 0000000..fdb7176 --- /dev/null +++ b/docs/notebooks.ipynb @@ -0,0 +1,122 @@ +{ + "cells": [ + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "# Content with notebooks\n", + "\n", + "You can also create content with Jupyter Notebooks. This means that you can include\n", + "code blocks and their outputs in your book.\n", + "\n", + "## Markdown + notebooks\n", + "\n", + "As it is markdown, you can embed images, HTML, etc into your posts!\n", + "\n", + "![](https://myst-parser.readthedocs.io/en/latest/_static/logo-wide.svg)\n", + "\n", + "You can also $add_{math}$ and\n", + "\n", + "$$\n", + "math^{blocks}\n", + "$$\n", + "\n", + "or\n", + "\n", + "$$\n", + "\\begin{aligned}\n", + "\\mbox{mean} la_{tex} \\\\ \\\\\n", + "math blocks\n", + "\\end{aligned}\n", + "$$\n", + "\n", + "But make sure you \\$Escape \\$your \\$dollar signs \\$you want to keep!\n", + "\n", + "## MyST markdown\n", + "\n", + "MyST markdown works in Jupyter Notebooks as well. For more information about MyST markdown, check\n", + "out [the MyST guide in Jupyter Book](https://jupyterbook.org/content/myst.html),\n", + "or see [the MyST markdown documentation](https://myst-parser.readthedocs.io/en/latest/).\n", + "\n", + "## Code blocks and outputs\n", + "\n", + "Jupyter Book will also embed your code blocks and output in your book.\n", + "For example, here's some sample Matplotlib code:" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "from matplotlib import rcParams, cycler\n", + "import matplotlib.pyplot as plt\n", + "import numpy as np\n", + "plt.ion()" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [ + "# Fixing random state for reproducibility\n", + "np.random.seed(19680801)\n", + "\n", + "N = 10\n", + "data = [np.logspace(0, 1, 100) + np.random.randn(100) + ii for ii in range(N)]\n", + "data = np.array(data).T\n", + "cmap = plt.cm.coolwarm\n", + "rcParams['axes.prop_cycle'] = cycler(color=cmap(np.linspace(0, 1, N)))\n", + "\n", + "\n", + "from matplotlib.lines import Line2D\n", + "custom_lines = [Line2D([0], [0], color=cmap(0.), lw=4),\n", + " Line2D([0], [0], color=cmap(.5), lw=4),\n", + " Line2D([0], [0], color=cmap(1.), lw=4)]\n", + "\n", + "fig, ax = plt.subplots(figsize=(10, 5))\n", + "lines = ax.plot(data)\n", + "ax.legend(custom_lines, ['Cold', 'Medium', 'Hot']);" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "There is a lot more that you can do with outputs (such as including interactive outputs)\n", + "with your book. For more information about this, see [the Jupyter Book documentation](https://jupyterbook.org)" + ] + } + ], + "metadata": { + "kernelspec": { + "display_name": "Python 3", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.8.0" + }, + "widgets": { + "application/vnd.jupyter.widget-state+json": { + "state": {}, + "version_major": 2, + "version_minor": 0 + } + } + }, + "nbformat": 4, + "nbformat_minor": 4 +} diff --git a/docs/poetry.lock b/docs/poetry.lock new file mode 100644 index 0000000..12bd2c6 --- /dev/null +++ b/docs/poetry.lock @@ -0,0 +1,2384 @@ +# This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand. + +[[package]] +name = "accessible-pygments" +version = "0.0.4" +description = "A collection of 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+mathpad = {path = ".."} +jupyter-book = "^0.15.1" +sphinx-autodoc-typehints = "^1.19" # we can't use newer versions because it needs sphinx > 7; unsupported by jupyter-book + +[build-system] +requires = ["poetry-core"] +build-backend = "poetry.core.masonry.api" diff --git a/docs/references.bib b/docs/references.bib new file mode 100644 index 0000000..783ec6a --- /dev/null +++ b/docs/references.bib @@ -0,0 +1,56 @@ +--- +--- + +@inproceedings{holdgraf_evidence_2014, + address = {Brisbane, Australia, Australia}, + title = {Evidence for {Predictive} {Coding} in {Human} {Auditory} {Cortex}}, + booktitle = {International {Conference} on {Cognitive} {Neuroscience}}, + publisher = {Frontiers in Neuroscience}, + author = {Holdgraf, Christopher Ramsay and de Heer, Wendy and Pasley, Brian N. and Knight, Robert T.}, + year = {2014} +} + +@article{holdgraf_rapid_2016, + title = {Rapid tuning shifts in human auditory cortex enhance speech intelligibility}, + volume = {7}, + issn = {2041-1723}, + url = {http://www.nature.com/doifinder/10.1038/ncomms13654}, + doi = {10.1038/ncomms13654}, + number = {May}, + journal = {Nature Communications}, + author = {Holdgraf, Christopher Ramsay and de Heer, Wendy and Pasley, Brian N. and Rieger, Jochem W. and Crone, Nathan and Lin, Jack J. and Knight, Robert T. and Theunissen, Frédéric E.}, + year = {2016}, + pages = {13654}, + file = {Holdgraf et al. - 2016 - Rapid tuning shifts in human auditory cortex enhance speech intelligibility.pdf:C\:\\Users\\chold\\Zotero\\storage\\MDQP3JWE\\Holdgraf et al. - 2016 - Rapid tuning shifts in human auditory cortex enhance speech intelligibility.pdf:application/pdf} +} + +@inproceedings{holdgraf_portable_2017, + title = {Portable learning environments for hands-on computational instruction using container-and cloud-based technology to teach data science}, + volume = {Part F1287}, + isbn = {978-1-4503-5272-7}, + doi = {10.1145/3093338.3093370}, + abstract = {© 2017 ACM. There is an increasing interest in learning outside of the traditional classroom setting. This is especially true for topics covering computational tools and data science, as both are challenging to incorporate in the standard curriculum. These atypical learning environments offer new opportunities for teaching, particularly when it comes to combining conceptual knowledge with hands-on experience/expertise with methods and skills. Advances in cloud computing and containerized environments provide an attractive opportunity to improve the effciency and ease with which students can learn. This manuscript details recent advances towards using commonly-Available cloud computing services and advanced cyberinfrastructure support for improving the learning experience in bootcamp-style events. We cover the benets (and challenges) of using a server hosted remotely instead of relying on student laptops, discuss the technology that was used in order to make this possible, and give suggestions for how others could implement and improve upon this model for pedagogy and reproducibility.}, + booktitle = {{ACM} {International} {Conference} {Proceeding} {Series}}, + author = {Holdgraf, Christopher Ramsay and Culich, A. and Rokem, A. and Deniz, F. and Alegro, M. and Ushizima, D.}, + year = {2017}, + keywords = {Teaching, Bootcamps, Cloud computing, Data science, Docker, Pedagogy} +} + +@article{holdgraf_encoding_2017, + title = {Encoding and decoding models in cognitive electrophysiology}, + volume = {11}, + issn = {16625137}, + doi = {10.3389/fnsys.2017.00061}, + abstract = {© 2017 Holdgraf, Rieger, Micheli, Martin, Knight and Theunissen. Cognitive neuroscience has seen rapid growth in the size and complexity of data recorded from the human brain as well as in the computational tools available to analyze this data. This data explosion has resulted in an increased use of multivariate, model-based methods for asking neuroscience questions, allowing scientists to investigate multiple hypotheses with a single dataset, to use complex, time-varying stimuli, and to study the human brain under more naturalistic conditions. These tools come in the form of “Encoding” models, in which stimulus features are used to model brain activity, and “Decoding” models, in which neural features are used to generated a stimulus output. Here we review the current state of encoding and decoding models in cognitive electrophysiology and provide a practical guide toward conducting experiments and analyses in this emerging field. Our examples focus on using linear models in the study of human language and audition. We show how to calculate auditory receptive fields from natural sounds as well as how to decode neural recordings to predict speech. The paper aims to be a useful tutorial to these approaches, and a practical introduction to using machine learning and applied statistics to build models of neural activity. The data analytic approaches we discuss may also be applied to other sensory modalities, motor systems, and cognitive systems, and we cover some examples in these areas. In addition, a collection of Jupyter notebooks is publicly available as a complement to the material covered in this paper, providing code examples and tutorials for predictive modeling in python. The aimis to provide a practical understanding of predictivemodeling of human brain data and to propose best-practices in conducting these analyses.}, + journal = {Frontiers in Systems Neuroscience}, + author = {Holdgraf, Christopher Ramsay and Rieger, J.W. and Micheli, C. and Martin, S. and Knight, R.T. and Theunissen, F.E.}, + year = {2017}, + keywords = {Decoding models, Encoding models, Electrocorticography (ECoG), Electrophysiology/evoked potentials, Machine learning applied to neuroscience, Natural stimuli, Predictive modeling, Tutorials} +} + +@book{ruby, + title = {The Ruby Programming Language}, + author = {Flanagan, David and Matsumoto, Yukihiro}, + year = {2008}, + publisher = {O'Reilly Media} +} diff --git a/docs/requirements.txt b/docs/requirements.txt new file mode 100644 index 0000000..7e821e4 --- /dev/null +++ b/docs/requirements.txt @@ -0,0 +1,3 @@ +jupyter-book +matplotlib +numpy diff --git a/docs/source/_static/.gitkeep b/docs/source/_static/.gitkeep deleted file mode 100644 index e69de29..0000000 diff --git a/docs/source/changelog.md b/docs/source/changelog.md deleted file mode 100644 index aa4b51a..0000000 --- a/docs/source/changelog.md +++ /dev/null @@ -1,2 +0,0 @@ -```{include} ../../CHANGELOG.md -``` diff --git a/docs/source/conf.py b/docs/source/conf.py deleted file mode 100644 index 4bcaaaf..0000000 --- a/docs/source/conf.py +++ /dev/null @@ -1,56 +0,0 @@ -# Configuration file for the Sphinx documentation builder. -# -# This file only contains a selection of the most common options. For a full -# list see the documentation: -# https://www.sphinx-doc.org/en/master/usage/configuration.html - -# -- Path setup -------------------------------------------------------------- - -# If extensions (or modules to document with autodoc) are in another directory, -# add these directories to sys.path here. If the directory is relative to the -# documentation root, use os.path.abspath to make it absolute, like shown here. -# -# import os -# import sys -# sys.path.insert(0, os.path.abspath('.')) - - -# -- Project information ----------------------------------------------------- - -project = "Block Diagram" -copyright = "2020, Callum J Hays" -author = "Callum J Hays" - - -# -- General configuration --------------------------------------------------- - -# Add any Sphinx extension module names here, as strings. They can be -# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom -# ones. -extensions = [ - "myst_parser", -] - -# The suffix of source filenames. -source_suffix = [".rst", ".md"] - -# Add any paths that contain templates here, relative to this directory. -templates_path = ["_templates"] - -# List of patterns, relative to source directory, that match files and -# directories to ignore when looking for source files. -# This pattern also affects html_static_path and html_extra_path. -exclude_patterns = [] - - -# -- Options for HTML output ------------------------------------------------- - -# The theme to use for HTML and HTML Help pages. See the documentation for -# a list of builtin themes. -# -html_theme = "sphinx_rtd_theme" - -# Add any paths that contain custom static files (such as style sheets) here, -# relative to this directory. They are copied after the builtin static files, -# so a file named "default.css" will overwrite the builtin "default.css". -html_static_path = ["_static"] diff --git a/docs/source/contributing.md b/docs/source/contributing.md deleted file mode 100644 index 52a3fc0..0000000 --- a/docs/source/contributing.md +++ /dev/null @@ -1,2 +0,0 @@ -```{include} ../../CONTRIBUTING.md -``` diff --git a/docs/source/index.md b/docs/source/index.md deleted file mode 100644 index 9f763c9..0000000 --- a/docs/source/index.md +++ /dev/null @@ -1,20 +0,0 @@ -# Welcome to Block Diagram documentation! - -```{toctree} -:caption: Installation & Usage -:maxdepth: 2 - -installation -usage -``` - -```{toctree} -:caption: Project Info -:maxdepth: 2 - -changelog -contributing -``` - -```{include} ../../README.md -``` diff --git a/docs/source/installation.md b/docs/source/installation.md deleted file mode 100644 index f763714..0000000 --- a/docs/source/installation.md +++ /dev/null @@ -1,8 +0,0 @@ -# Installation - -The package is published on [PyPI](https://pypi.org/project/mathpad/) -and can be installed with `pip` (or any equivalent): - -```bash -pip install mathpad -``` diff --git a/docs/source/usage.md b/docs/source/usage.md deleted file mode 100644 index 49ca163..0000000 --- a/docs/source/usage.md +++ /dev/null @@ -1,9 +0,0 @@ -# Usage - -To use this package, import it: - -```python -import mathpad -``` - -TODO: Document usage diff --git a/mathpad/core/_generate_units_py.py b/mathpad/core/_generate_units_py.py index ce8b1cd..d95f927 100644 --- a/mathpad/core/_generate_units_py.py +++ b/mathpad/core/_generate_units_py.py @@ -16,19 +16,20 @@ print("writing to " + f"{HERE}/units.py\nand {HERE}/constants.py") -with open(f"{HERE}/units.py", "w") as units_f, open( - f"{HERE}/constants.py", "w" -) as constants_f: +with ( + open(f"{HERE}/units.py", "w") as units_f, + open(f"{HERE}/constants.py", "w") as constants_f +): # top of 'units.py' units_f.write(AUTOGEN_WARNING) units_f.write("import sympy.physics.units.definitions.unit_definitions as u\n") - units_f.write("from mathpad.physical_quantities import *\n") + units_f.write("from mathpad.val import *\n") # top of 'constants.py' constants_f.write(AUTOGEN_WARNING) constants_f.write("import sympy.physics.units.definitions.unit_definitions as u\n") - constants_f.write("from mathpad.physical_quantities import *\n") + constants_f.write("from mathpad.val import *\n") for name in dir(u): qty = getattr(u, name) diff --git a/mathpad/core/constants.py b/mathpad/core/constants.py new file mode 100644 index 0000000..f9c7ce4 --- /dev/null +++ b/mathpad/core/constants.py @@ -0,0 +1,3 @@ +"WARNING: this file was automatically generated by commented code within mathpad.py, and then modified slightly" +import sympy.physics.units.definitions.unit_definitions as u +from mathpad.val import * diff --git a/mathpad/core/units.py b/mathpad/core/units.py index ca7d341..de0655b 100644 --- a/mathpad/core/units.py +++ b/mathpad/core/units.py @@ -1,300 +1,15 @@ -"WARNING: this file was automatically generated by commented code within mathpad.py, and then modified slightly" -import sympy.physics.units.definitions.unit_definitions as u -from mathpad.core.dimensions import * - -__all__ = [ - "A", "Bq", "C", "D", "F", "G", "Gy", "H", "Hz", "J", "K", "N", "Pa", "R", "S", "T", "V", "W", "Wb", "Z0", - "acceleration_due_to_gravity", "ampere", "amperes", "amu", "amus", "rad", "angular_mil", "angular_mils", - "anomalistic_year", "anomalistic_years", "astronomical_unit", "astronomical_units", "atm", "atmosphere", - "atmospheres", "atomic_mass_unit", "au", "avogadro_number", "bar", "bars", "becquerel", "bit", "bits", "byte", - "c", "candela", "candelas", "cd", "centiliter", "centiliters", "centimeter", "centimeters", "cl", "cm", - "common_year", "common_years", "coulomb", "coulombs", "curie", "day", "days", "deciliter", "deciliters", - "decimeter", "decimeters", "deg", "degree", "degrees", "dioptre", "dl", "dm", "draconic_year", "draconic_years", - "e0", "eV", "electronvolt", "electronvolts", "elementary_charge", "exbibyte", "exbibytes", "farad", "farads", - "feet", "foot", "ft", "full_moon_cycle", "full_moon_cycles", "g", "gaussian_year", "gaussian_years", "gee", "gees", - "gibibyte", "gibibytes", "gram", "grams", "gray", "h", "hbar", "henry", "henrys", "hertz", "hour", "hours", "hz", - "inch", "inches", "joule", "joules", "julian_year", "julian_years", "kPa", "kat", "katal", "kelvin", "kelvins", - "kg", "kibibyte", "kibibytes", "kilogram", "kilograms", "kilometer", "kilometers", "kilopascal", "km", "l", "lightyear", - "lightyears", "liter", "liters", "lux", "lx", "ly", "m", "mebibyte", "mebibytes", "meter", "meters", "mg", "mho", "mhos", - "mi", "microgram", "micrograms", "micrometer", "micrometers", "micron", "microns", "microsecond", "microseconds", "mil", - "mile", "miles", "milli_mass_unit", "milligram", "milligrams", "milliliter", "milliliters", "millimeter", - "millimeters", "millisecond", "milliseconds", "minute", "minutes", "ml", "mm", "mmHg", "mmu", "mmus", - "mol", "mole", "moles", "ms", "nanometer", "nanometers", "nanosecond", "nanoseconds", "nautical_mile", - "nautical_miles", "newton", "newtons", "nm", "nmi", "ns", "ohm", "ohms", "optical_power", "pa", "pascal", - "pascals", "pebibyte", "pebibytes", "percent", "percents", "permille", "picometer", "picometers", "picosecond", - "picoseconds", "planck", "planck_acceleration", "planck_angular_frequency", "planck_area", "planck_charge", - "planck_current", "planck_density", "planck_energy", "planck_energy_density", "planck_force", "planck_impedance", - "planck_intensity", "planck_length", "planck_mass", "planck_momentum", "planck_power", "planck_pressure", - "planck_temperature", "planck_time", "planck_voltage", "planck_volume", "pm", "pound", "pounds", "ps", "psi", - "quart", "quarts", "rad", "radian", "radians", "rutherford", "s", "second", "seconds", "sidereal_year", "sidereal_years", - "siemens", "speed_of_light", "sr", "steradian", "steradians", "tebibyte", "tebibytes", "tesla", "teslas", "torr", - "tropical_year", "tropical_years", "ug", "um", "us", "v", "vacuum_impedance", "vacuum_permittivity", "volt", "volts", - "watt", "watts", "wb", "weber", "webers", "yard", "yards", "yd", "year", "years" -] - -A = Current(u.A) -Bq = Frequency(u.Bq) -C = Charge(u.C) -D = Dioptre(u.D) -F = Capacitance(u.F) -G = GravityConstant(u.G) -Gy = Gray(u.Gy) -H = Inductance(u.H) -Hz = Frequency(u.Hz) -J = Energy(u.J) -K = Temperature(u.K) -N = Force(u.N) -Pa = EnergyDensity(u.Pa) -R = MolarGasConstant(u.R) -S = Conductance(u.S) -T = MagneticDensity(u.T) -V = Voltage(u.V) -W = Power(u.W) -Wb = MagneticFlux(u.Wb) -Z0 = Impedance(u.Z0) -acceleration_due_to_gravity = Acceleration(u.acceleration_due_to_gravity) -ampere = Current(u.ampere) -amperes = Current(u.amperes) -amu = Mass(u.amu) -amus = Mass(u.amus) -rad = Angle(u.rad) -angular_mil = AngularMil(u.angular_mil) -angular_mils = AngularMil(u.angular_mils) -anomalistic_year = Time(u.anomalistic_year) -anomalistic_years = Time(u.anomalistic_years) -astronomical_unit = Length(u.astronomical_unit) -astronomical_units = Length(u.astronomical_units) -atm = EnergyDensity(u.atm) -atmosphere = EnergyDensity(u.atmosphere) -atmospheres = EnergyDensity(u.atmospheres) -atomic_mass_unit = Mass(u.atomic_mass_unit) -au = Length(u.au) -avogadro_number = Dimensionless(u.avogadro_number) -bar = EnergyDensity(u.bar) -bars = EnergyDensity(u.bars) -becquerel = Frequency(u.becquerel) -bit = Information(u.bit) -bits = Information(u.bits) -byte = Information(u.byte) -c = Velocity(u.c) -candela = LuminousIntensity(u.candela) -candelas = LuminousIntensity(u.candelas) -cd = LuminousIntensity(u.cd) -centiliter = Volume(u.centiliter) -centiliters = Volume(u.centiliters) -centimeter = Length(u.centimeter) -centimeters = Length(u.centimeters) -cl = Volume(u.cl) -cm = Length(u.cm) -common_year = Time(u.common_year) -common_years = Time(u.common_years) -coulomb = Charge(u.coulomb) -coulombs = Charge(u.coulombs) -curie = Frequency(u.curie) -day = Time(u.day) -days = Time(u.days) -deciliter = Volume(u.deciliter) -deciliters = Volume(u.deciliters) -decimeter = Length(u.decimeter) -decimeters = Length(u.decimeters) -deg = Dimensionless(u.deg) -degree = Dimensionless(u.degree) -degrees = Dimensionless(u.degrees) -dioptre = Dioptre(u.dioptre) -dl = Volume(u.dl) -dm = Length(u.dm) -draconic_year = Time(u.draconic_year) -draconic_years = Time(u.draconic_years) -e0 = Permittivity(u.e0) -eV = Energy(u.eV) -electronvolt = Energy(u.electronvolt) -electronvolts = Energy(u.electronvolts) -elementary_charge = Charge(u.elementary_charge) -exbibyte = Information(u.exbibyte) -exbibytes = Information(u.exbibytes) -farad = Capacitance(u.farad) -farads = Capacitance(u.farads) -feet = Length(u.feet) -foot = Length(u.foot) -ft = Length(u.ft) -full_moon_cycle = Time(u.full_moon_cycle) -full_moon_cycles = Time(u.full_moon_cycles) -g = Mass(u.g) -gaussian_year = Time(u.gaussian_year) -gaussian_years = Time(u.gaussian_years) -gee = Acceleration(u.gee) -gees = Acceleration(u.gees) -gibibyte = Information(u.gibibyte) -gibibytes = Information(u.gibibytes) -gram = Mass(u.gram) -grams = Mass(u.grams) -gray = Gray(u.gray) -h = Time(u.h) -hbar = Action(u.hbar) -henry = Inductance(u.henry) -henrys = Inductance(u.henrys) -hertz = Frequency(u.hertz) -hour = Time(u.hour) -hours = Time(u.hours) -hz = Frequency(u.hz) -inch = Length(u.inch) -inches = Length(u.inches) -joule = Energy(u.joule) -joules = Energy(u.joules) -julian_year = Time(u.julian_year) -julian_years = Time(u.julian_years) -kPa = EnergyDensity(u.kPa) -kat = Katal(u.kat) -katal = Katal(u.katal) -kelvin = Temperature(u.kelvin) -kelvins = Temperature(u.kelvins) -kg = Mass(u.kg) -kibibyte = Information(u.kibibyte) -kibibytes = Information(u.kibibytes) -kilogram = Mass(u.kilogram) -kilograms = Mass(u.kilograms) -kilometer = Length(u.kilometer) -kilometers = Length(u.kilometers) -kilopascal = EnergyDensity(u.kilopascal) -km = Length(u.km) -l = Volume(u.l) -lightyear = Length(u.lightyear) -lightyears = Length(u.lightyears) -liter = Volume(u.liter) -liters = Volume(u.liters) -lux = Illuminance(u.lux) -lx = Illuminance(u.lx) -ly = Length(u.ly) -m = Length(u.m) -mebibyte = Information(u.mebibyte) -mebibytes = Information(u.mebibytes) -meter = Length(u.meter) -meters = Length(u.meters) -mg = Mass(u.mg) -mho = Conductance(u.mho) -mhos = Conductance(u.mhos) -mi = Length(u.mi) -microgram = Mass(u.microgram) -micrograms = Mass(u.micrograms) -micrometer = Length(u.micrometer) -micrometers = Length(u.micrometers) -micron = Length(u.micron) -microns = Length(u.microns) -microsecond = Time(u.microsecond) -microseconds = Time(u.microseconds) -mil = AngularMil(u.mil) -mile = Length(u.mile) -miles = Length(u.miles) -milli_mass_unit = Mass(u.milli_mass_unit) -milligram = Mass(u.milligram) -milligrams = Mass(u.milligrams) -milliliter = Volume(u.milliliter) -milliliters = Volume(u.milliliters) -millimeter = Length(u.millimeter) -millimeters = Length(u.millimeters) -millisecond = Time(u.millisecond) -milliseconds = Time(u.milliseconds) -minute = Time(u.minute) -minutes = Time(u.minutes) -ml = Volume(u.ml) -mm = Length(u.mm) -mmHg = EnergyDensity(u.mmHg) -mmu = Mass(u.mmu) -mmus = Mass(u.mmus) -mol = AmountOfSubstance(u.mol) -mole = AmountOfSubstance(u.mole) -moles = AmountOfSubstance(u.moles) -ms = Time(u.ms) -nanometer = Length(u.nanometer) -nanometers = Length(u.nanometers) -nanosecond = Time(u.nanosecond) -nanoseconds = Time(u.nanoseconds) -nautical_mile = Length(u.nautical_mile) -nautical_miles = Length(u.nautical_miles) -newton = Force(u.newton) -newtons = Force(u.newtons) -nm = Length(u.nm) -nmi = Length(u.nmi) -ns = Time(u.ns) -ohm = Impedance(u.ohm) -ohms = Impedance(u.ohms) -optical_power = Dioptre(u.optical_power) -pa = EnergyDensity(u.pa) -pascal = EnergyDensity(u.pascal) -pascals = EnergyDensity(u.pascals) -pebibyte = Information(u.pebibyte) -pebibytes = Information(u.pebibytes) -percent = Dimensionless(u.percent) -percents = Dimensionless(u.percents) -permille = Dimensionless(u.permille) -picometer = Length(u.picometer) -picometers = Length(u.picometers) -picosecond = Time(u.picosecond) -picoseconds = Time(u.picoseconds) -planck = Action(u.planck) -planck_acceleration = Acceleration(u.planck_acceleration) -planck_angular_frequency = Frequency(u.planck_angular_frequency) -planck_area = Area(u.planck_area) -planck_charge = Charge(u.planck_charge) -planck_current = Current(u.planck_current) -planck_density = Density(u.planck_density) -planck_energy = Energy(u.planck_energy) -planck_energy_density = EnergyDensity(u.planck_energy_density) -planck_force = Force(u.planck_force) -planck_impedance = Impedance(u.planck_impedance) -planck_intensity = PlanckIntensity(u.planck_intensity) -planck_length = Length(u.planck_length) -planck_mass = Mass(u.planck_mass) -planck_momentum = Momentum(u.planck_momentum) -planck_power = Power(u.planck_power) -planck_pressure = EnergyDensity(u.planck_pressure) -planck_temperature = Temperature(u.planck_temperature) -planck_time = Time(u.planck_time) -planck_voltage = Voltage(u.planck_voltage) -planck_volume = Volume(u.planck_volume) -pm = Length(u.pm) -pound = Mass(u.pound) -pounds = Mass(u.pounds) -ps = Time(u.ps) -psi = EnergyDensity(u.psi) -quart = Volume(u.quart) -quarts = Volume(u.quarts) -rad = Angle(u.rad) -radian = Angle(u.radian) -radians = Angle(u.radians) -rutherford = Frequency(u.rutherford) -s = Time(u.s) -second = Time(u.second) -seconds = Time(u.seconds) -sidereal_year = Time(u.sidereal_year) -sidereal_years = Time(u.sidereal_years) -siemens = Conductance(u.siemens) -speed_of_light = Velocity(u.speed_of_light) -sr = SteRadian(u.sr) -steradian = SteRadian(u.steradian) -steradians = SteRadian(u.steradians) -tebibyte = Information(u.tebibyte) -tebibytes = Information(u.tebibytes) -tesla = MagneticDensity(u.tesla) -teslas = MagneticDensity(u.teslas) -torr = EnergyDensity(u.torr) -tropical_year = Time(u.tropical_year) -tropical_years = Time(u.tropical_years) -ug = Mass(u.ug) -um = Length(u.um) -us = Time(u.us) -v = Voltage(u.v) -vacuum_impedance = Impedance(u.vacuum_impedance) -vacuum_permittivity = Permittivity(u.vacuum_permittivity) -volt = Voltage(u.volt) -volts = Voltage(u.volts) -watt = Power(u.watt) -watts = Power(u.watts) -wb = MagneticFlux(u.wb) -weber = MagneticFlux(u.weber) -webers = MagneticFlux(u.webers) -yard = Length(u.yard) -yards = Length(u.yards) -yd = Length(u.yd) -year = Time(u.year) -years = Time(u.years) \ No newline at end of file +"WARNING: this file was automatically generated by commented code within mathpad.py, and then modified slightly" +import sympy.physics.units.definitions.unit_definitions as u +from mathpad.val import * + +A = Current(u.A) +Bq = Frequency(u.Bq) +C = Charge(u.C) +D = Dioptre(u.D) +F = Capacitance(u.F) +G = GravityConstant(u.G) +Gy = Gray(u.Gy) +H = Inductance(u.H) +Hz = Frequency(u.Hz) +J = Energy(u.J) +K = Temperature(u.K) \ No newline at end of file diff --git a/poetry.lock b/poetry.lock index 34545f9..8719318 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,18 +1,40 @@ +# This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand. + +[[package]] +name = "accessible-pygments" +version = "0.0.4" +description = "A collection of accessible pygments styles" +optional = false +python-versions = "*" +files = [ + {file = "accessible-pygments-0.0.4.tar.gz", hash = "sha256:e7b57a9b15958e9601c7e9eb07a440c813283545a20973f2574a5f453d0e953e"}, + {file = "accessible_pygments-0.0.4-py2.py3-none-any.whl", hash = "sha256:416c6d8c1ea1c5ad8701903a20fcedf953c6e720d64f33dc47bfb2d3f2fa4e8d"}, +] + +[package.dependencies] +pygments = ">=1.5" + [[package]] name = "aiofiles" version = "22.1.0" description = "File support for asyncio." -category = "dev" optional = false python-versions = ">=3.7,<4.0" +files = [ + {file = "aiofiles-22.1.0-py3-none-any.whl", hash = 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-ypy-websocket = [ + +[[package]] +name = "ypy-websocket" +version = "0.8.2" +description = "WebSocket connector for Ypy" +optional = false +python-versions = ">=3.7" +files = [ {file = "ypy_websocket-0.8.2-py3-none-any.whl", hash = "sha256:9049d5a7d61c26c2b5a39757c9ffcbe2274bf3553adeea8de7fe1c04671d4145"}, {file = "ypy_websocket-0.8.2.tar.gz", hash = "sha256:491b2cc4271df4dde9be83017c15f4532b597dc43148472eb20c5aeb838a5b46"}, ] -zipp = [ + +[package.dependencies] +aiofiles = ">=22.1.0,<23" +aiosqlite = ">=0.17.0,<1" +y-py = ">=0.5.3,<0.6.0" + +[package.extras] +test = ["mypy", "pre-commit", "pytest", "pytest-asyncio", "websockets (>=10.0)"] + +[[package]] +name = "zipp" +version = "3.15.0" +description = "Backport of pathlib-compatible object wrapper for zip files" +optional = false +python-versions = ">=3.7" +files = [ {file = "zipp-3.15.0-py3-none-any.whl", hash = "sha256:48904fc76a60e542af151aded95726c1a5c34ed43ab4134b597665c86d7ad556"}, {file = "zipp-3.15.0.tar.gz", hash = "sha256:112929ad649da941c23de50f356a2b5570c954b65150642bccdd66bf194d224b"}, ] + +[package.extras] +docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"] +testing = ["big-O", "flake8 (<5)", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)"] + +[extras] +viz = [] + +[metadata] +lock-version = "2.0" +python-versions = ">=3.7,<3.11" +content-hash = "76d569496c4ff2e2bb1943255387b2395c832b8b4c7134d36a640838699fcbe6" diff --git a/pyproject.toml b/pyproject.toml index d4efa77..0c85ed8 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -32,6 +32,9 @@ scipy = "^1.7.1" [tool.poetry.extras] viz = ["plotly", "k3d", "tqdm"] +[tool.poetry.group.dev.dependencies] +jupyter-book = "^0.15.1" + [build-system] requires = ["poetry-core>=1.0.0"] build-backend = "poetry.core.masonry.api"