environment.yml

name: base
channels:
  - bioconda
  - conda-forge
  - defaults
dependencies:
  - _libgcc_mutex=0.1=main
  - asn1crypto=0.24.0=py37_0
  - bcftools=1.9=ha228f0b_4
  - bzip2=1.0.6=h14c3975_5
  - ca-certificates=2019.6.16=hecc5488_0
  - certifi=2019.6.16=py37_0
  - cffi=1.12.2=py37h2e261b9_1
  - chardet=3.0.4=py37_1
  - conda=4.7.5=py37_0
  - conda-package-handling=1.3.10=py37_0
  - cryptography=2.6.1=py37h1ba5d50_0
  - curl=7.64.1=hbc83047_0
  - htslib=1.9=ha228f0b_7
  - idna=2.8=py37_0
  - krb5=1.16.1=h173b8e3_7
  - libarchive=3.3.3=h5d8350f_5
  - libcurl=7.64.1=h20c2e04_0
  - libdeflate=1.0=h14c3975_1
  - libedit=3.1.20181209=hc058e9b_0
  - libffi=3.2.1=hd88cf55_4
  - libgcc-ng=8.2.0=hdf63c60_1
  - libssh2=1.8.2=h1ba5d50_0
  - libstdcxx-ng=8.2.0=hdf63c60_1
  - libxml2=2.9.9=hea5a465_1
  - lz4-c=1.8.3=he1b5a44_1001
  - lzo=2.10=h49e0be7_2
  - ncurses=6.1=he6710b0_1
  - openssl=1.1.1b=h14c3975_1
  - pip=19.0.3=py37_0
  - pycosat=0.6.3=py37h14c3975_0
  - pycparser=2.19=py37_0
  - pyopenssl=19.0.0=py37_0
  - pysam=0.15.2=py37h4b7d16d_3
  - pysocks=1.6.8=py37_0
  - python=3.7.3=h0371630_0
  - python-libarchive-c=2.8=py37_6
  - readline=7.0=h7b6447c_5
  - requests=2.21.0=py37_0
  - ruamel_yaml=0.15.46=py37h14c3975_0
  - samtools=1.9=h8571acd_11
  - setuptools=41.0.0=py37_0
  - six=1.12.0=py37_0
  - sqlite=3.27.2=h7b6447c_0
  - tk=8.6.8=hbc83047_0
  - tqdm=4.32.1=py_0
  - urllib3=1.24.1=py37_0
  - wheel=0.33.1=py37_0
  - xz=5.2.4=h14c3975_4
  - yaml=0.1.7=had09818_2
  - zlib=1.2.11=h7b6447c_3
  - zstd=1.3.7=h0b5b093_0
  - pip:
    - attrs==19.1.0
    - bravado==9.2.2
    - bravado-core==4.13.4
    - click==7.0
    - clickclick==1.2.2
    - connexion==1.4.2
    - flask==1.0.3
    - flask-cors==3.0.4
    - ga4gh-dos-schemas==0.4.2
    - inflection==0.3.1
    - itsdangerous==1.1.0
    - jinja2==2.10.1
    - jsonpointer==2.0
    - jsonref==0.2
    - jsonschema==3.0.1
    - markupsafe==1.1.1
    - minio==4.0.17
    - python-dateutil==2.8.0
    - pytz==2019.1
    - rfc3987==1.3.8
    - simplejson==3.16.0
    - swagger-spec-validator==2.4.3
    - webcolors==1.9.1
    - werkzeug==0.15.4
prefix: /opt/conda