From 9282492c2f966b2b6ff410ab04b5328277783ea2 Mon Sep 17 00:00:00 2001 From: HNHalstead <47102761+HNHalstead@users.noreply.github.com> Date: Tue, 7 Nov 2023 14:25:17 -0800 Subject: [PATCH] Update task_nextclade.wdl --- tasks/taxon_id/task_nextclade.wdl | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/tasks/taxon_id/task_nextclade.wdl b/tasks/taxon_id/task_nextclade.wdl index c435a6971..5cb450895 100644 --- a/tasks/taxon_id/task_nextclade.wdl +++ b/tasks/taxon_id/task_nextclade.wdl @@ -144,7 +144,7 @@ task nextclade_output_parser { nc_lineage = tsv_dict['lineage'] if nc_lineage is None: nc_lineage = "" - elif 'lineage' in tsv_dict: + elif 'Nextclade_pango' in tsv_dict: nc_lineage = tsv_dict['Nextclade_pango'] if nc_lineage is None: nc_lineage = ""