diff --git a/tasks/utilities/task_utilities.wdl b/tasks/utilities/task_utilities.wdl index f0599942a..175519e76 100644 --- a/tasks/utilities/task_utilities.wdl +++ b/tasks/utilities/task_utilities.wdl @@ -151,7 +151,7 @@ task split_by_clade { } command <<< # date and version control - date | scatter DATE + date | tee DATE python3<>> output { @@ -441,7 +441,7 @@ task concat_fastq { } command <<< - date | scatter DATE + date | tee DATE cat ~{read1_cleaned} ~{read2_cleaned}>~{samplename}_total_reads.fastq >>> output { @@ -466,9 +466,9 @@ task run_note { } command <<< - date | scatter DATE + date | tee DATE touch none.txt - echo "~{note}" | scatter PIPELINE_NOTE + echo "~{note}" | tee PIPELINE_NOTE >>> output { String date = read_string("DATE")