From eb94d8066b3f8c26fdc65c6a92d63aaedf33f804 Mon Sep 17 00:00:00 2001
From: HNHalstead <47102761+HNHalstead@users.noreply.github.com>
Date: Tue, 13 Feb 2024 20:36:59 -0800
Subject: [PATCH] Update task_utilities.wdl

---
 tasks/utilities/task_utilities.wdl | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

diff --git a/tasks/utilities/task_utilities.wdl b/tasks/utilities/task_utilities.wdl
index c1b6c4e79..8db96e14b 100644
--- a/tasks/utilities/task_utilities.wdl
+++ b/tasks/utilities/task_utilities.wdl
@@ -293,9 +293,11 @@ task scatter_by_clade {
     mkdir files_dir
 
 
-    if [[ -v ~{sep=' ' unique_clusters} ]]
+
+    clust=~{sep=' ' unique_clusters}
+
+    if [[ -v $clust ]]
     then
-    clust = ~{sep=' ' unique_clusters}
     echo ${clust[${clust_idx}]} | tee CLUSTER
     fi