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Ani threshold test #4

Merged
merged 8 commits into from
Apr 8, 2024
Merged

Ani threshold test #4

merged 8 commits into from
Apr 8, 2024

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DOH-JDJ0303
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PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/refmaker branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

DOH-HNH0303 and others added 8 commits March 29, 2024 16:10
@DOH-HNH0303
Create test_dataset.py
8f3289e 
test_dataset.py can generate test dataset for range of ani distances
@DOH-HNH0303
Create README.md
da57c25
@DOH-HNH0303
Update README.md
340ef65
@DOH-HNH0303
Update README.md
433b32e
@DOH-HNH0303
Update README.md
193732f
@DOH-HNH0303
Update test_ani_dist.py
cab44ae 
can handle parallel processing
@DOH-HNH0303
Update test_ani_dist.py
cdfade8 
now produces summary.csv, minor output filename revision to change how files are listed (now by ANI instead of by replicate)
@DOH-HNH0303
Update test_ani_dist.py
237daff
@DOH-JDJ0303 DOH-JDJ0303 merged commit 2d9625a into main Apr 8, 2024
0 of 4 checks passed
@DOH-JDJ0303 DOH-JDJ0303 deleted the ani_threshold_test branch April 8, 2024 17:51
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@DOH-JDJ0303 @DOH-HNH0303