update-target.yaml

name: Update target data

on:
  workflow_dispatch:
  workflow_run:
    workflows: [Update RSV data]
    types:
      - completed

jobs:
  update-target-data:
    runs-on: ubuntu-latest

    steps:
      - name: Checkout repository
        uses: actions/checkout@v3

      - name: Setup R
        uses: r-lib/actions/setup-r@v2

      - name: Install system dependencies
        run: sudo apt-get install libcurl4-openssl-dev libudunits2-dev libgdal-dev

      - name: Install dependencies
        run: |
          R -e 'install.packages(c("lubridate", "dplyr", "tidyr", "arrow"))'

      - name: Update target data
        run: Rscript target-data/get_target_data.R

      - name: Commit
        run: |
          git config user.name Github-Actions
          git config user.email "<>"
          if [ -n "$(git status --porcelain)" ]; then
            git add .
            git commit -m "Update target data $(date)"
            git push
            echo "Target data updated";
          else
              echo "no updates";
          fi