diff --git a/.gitignore b/.gitignore new file mode 100644 index 00000000..30d729f4 --- /dev/null +++ b/.gitignore @@ -0,0 +1,3 @@ + +model-output/.DS_Store +.DS_Store diff --git a/model-metadata/CU-RSV_SVIRS.yml b/model-metadata/CU-RSV_SVIRS.yml new file mode 100644 index 00000000..27f86950 --- /dev/null +++ b/model-metadata/CU-RSV_SVIRS.yml @@ -0,0 +1,25 @@ +schema_version: "https://raw.githubusercontent.com/Infectious-Disease-Modeling-Hubs/schemas/main/v2.0.0/admin-schema.json" +team_name: "Columbia University" +team_abbr: "CU" +model_name: "RSV_SVIRS" +model_abbr: "RSV_SVIRS" +model_contributors: [ + { + "name": "Yamana Teresa", + "affiliation": "Columbia University", + "email": "tky2104@cumc.columbia.edu" + }, + { + "name": "Pei Sen", + "affiliation": "Columbia University", + "email": "sp3449@cumc.columbia.edu" + } +] +license: "CC-BY-4.0" +methods: "Age-structured SVIRS model coupled with Ensemble Adjustment Kalman Filter. Inputs CDC RSV-NET, POLYMOD contact matrix, and seasonal absolute humidity" +methods_long: "Age-structured state-level SVIRS compartmental model coupled with Ensemble Adjustment Kalman Filter. Model is fit to CDC RSV-NET data. Each state’s population divided into age categories: <1, 1-4, 5-64, and 65+. Model transmission rate is modified by seasonal absolute humidity. Contacts between age groups are informed by the POLYMOD study. 300 ensemble members are initialized for each location." +model_version: "1.0" +website_url: "https://github.com/tkcy/projections2023_2024/" +team_funding: "CSTE NU38OT00297" +data_inputs: "CDC RSV-NET, POLYMOD contact matrix, and seasonal absolute humidity" + diff --git a/model-output/CU-RSV_SVIRS/2024-02-25-CU-RSV_SVIRS.parquet b/model-output/CU-RSV_SVIRS/2024-02-25-CU-RSV_SVIRS.parquet new file mode 100644 index 00000000..b3f2be74 Binary files /dev/null and b/model-output/CU-RSV_SVIRS/2024-02-25-CU-RSV_SVIRS.parquet differ