Nextflow Tower CLI - Go version

Implementation of tower-cli in Go.

Work in progress

Development

Required dependencies:

• Go 1.19+
• For generating client from OpenAPI spec:
  • java 11
  • Gradle 6.6.1+ (optional, local gradlew script can be used)
  • sed command in shell

Cloning sources

git clone --recurse-submodules https://github.com/JaimeSeqLabs/tower-cli-go.git

Generating Tower go sdk

Java 11 is required

In project root run:

go generate ./...

Or run:

sh gen_tower_sdk.sh

These commands perform some patches to the generated code using sed

Building CLI

go build -o ./tw cmd/cli/main.go

You can also run the CLI without building the binary like this:

go run cmd/cli/main.go --help

Usage example

$ export TOWER_ACCESS_TOKEN=<your_tower_token>
$ ./tw organizations list
$ go run cmd/cli/main.go organizations list

Status

Actions:

• Add
• View
• List
• Update
• Delete

Collaborators:

• List

Compute-envs:

• Add
• View
• List
• Update
• Delete
• Export
• Import
• Primary

Credentials:

• Add
• List
• Update
• Delete

Datasets:

• Add
• List
• View
• Update
• Delete
• Download
• Url

Info:

• [X]

Launch:

• [ ]

Members:

• Add
• List
• Update
• Delete
• Leave

Organizations:

• Add
• View
• List
• Update
• Delete

Participants:

• Add
• List
• Update
• Delete
• Leave

Pipelines:

• Add
• View
• List
• Update
• Delete
• Export
• Import

Runs:

• View
• List
• Relaunch
• Cancel
• Delete

Teams:

• Add
• List
• Members
• Delete

Workspaces:

• Add
• List
• View
• Update
• Delete
• Leave

Secrets:

• Add
• View
• List
• Update
• Delete