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Switch to VOGdb for phage identification #7

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Jtrachsel opened this issue Apr 18, 2022 · 1 comment

Owner

Jtrachsel commented Apr 18, 2022

Currently use a database from prophet, which is not an actively updated tool. https://github.com/jaumlrc/ProphET

Would be nice to use this database instead:
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5210652/
https://vogdb.org/

Owner Author

Jtrachsel commented Apr 18, 2022

download for pVOG genes fna: http://fileshare.csb.univie.ac.at/vog/latest/vog.genes.all.fa.gz
This is currently 128MB... dont know if it's clustered or not...

All latest files here:
http://fileshare.csb.univie.ac.at/vog/latest/

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