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MRtrix3 was not found during proc_structural #137

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DannyStruijk opened this issue Oct 21, 2024 · 0 comments
Open

MRtrix3 was not found during proc_structural #137

DannyStruijk opened this issue Oct 21, 2024 · 0 comments

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@DannyStruijk
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DannyStruijk commented Oct 21, 2024

Hi,

I have currently pulled the latest micapipe version from docker and built a .sif singularity file, which all worked fine. When trying the -proc_structural command within this container, the following output is given:


MICA pipeline - (Version v0.2.3 'Northern flicker') 
	Subject: 011 Session: SINGLE


[ ERROR ]..... MRtrix3 was not found


Is there something I missed during set-up? Or is there a known solution?

Thanks in advance!

Additional information:
Singularity version: 3.6.3
Micapipe version: 0.2.3
Operation System: Ubuntu 22.0.5

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