The purpose of this library is to help users interact with the bacterial-fungal-interactions database, found on the BFI Research Portal interact with the data programatically. This is a lightweight wrapper around a few api endpoints. The package also has a few helper functions to link up doi's and quick search papers.
The goal of the Chain SFA is to close the knowledge gaps when it comes to studying BFI. The current database houses 6049 bfi pairs.
Cool photo of MRE:
pip install bfibundle
Or via docker:
docker pull mbabinski17/bfibundle
Check out demo here as a jupyter notebook.
For more feature requests, please make a PR.
Aaron Robinson LANL Scientist [email protected]
Michal Babinski LANL Computational Biologist [email protected]
- 0.1.0
- Initial Release
This project is licensed under the MIT License - see the LICENSE.md file for details