Day 1
- Basic commands
- Installing and finding packages
- Getting data into R
- Basic visualization
- Spatial data in R
Day 2
- Finding ecological data and getting it into R
- rgbif, spocc, raster, CHECK OTHER!
- Introduction to statistical modeling - regression and machine learning
- Introduction to SDM - theory and practice
- SDM example
- Mapmaking with R
- Interactive mapping with R and webmaps
Day 3
- Introduction to high performance computing
- Basic linux terminal commands
- Using the IIAP Manati cluster and PBS batch management software.
- Creating bash scripts and running jobs
- Parallel computing
- Example with parallel SDMs
- If there's time - code profiling, troubleshooting, extending R with C++