From eb5bd68f5e24f3928f9f295d20a3950f5dde1471 Mon Sep 17 00:00:00 2001
From: betolink <betolin@gmail.com>
Date: Sun, 18 Feb 2024 21:50:28 -0600
Subject: [PATCH] adding explicit opendap kernel

---
 ci/Dockerfile                           |  4 --
 ci/conda-linux-64.lock                  |  2 +-
 ci/environment.yml                      |  2 +-
 ci/environments/opendap/environment.yml | 64 +++++++++++++++++++++++++
 ci/environments/opendap/name.txt        |  1 +
 ci/requirements.txt                     |  1 +
 6 files changed, 68 insertions(+), 6 deletions(-)
 create mode 100644 ci/environments/opendap/environment.yml
 create mode 100644 ci/environments/opendap/name.txt

diff --git a/ci/Dockerfile b/ci/Dockerfile
index 4e9b098..f0f5695 100644
--- a/ci/Dockerfile
+++ b/ci/Dockerfile
@@ -10,8 +10,6 @@ ENV QUARTO_CLI=https://github.com/quarto-dev/quarto-cli/releases/download/v1.3.4
 
 RUN wget -O /tmp/quarto.deb ${QUARTO_CLI} && dpkg -i /tmp/quarto.deb && rm -rf /tmp/quarto.deb && apt-get clean
 
-RUN conda activate notebook && conda uninstall -y netcdf4 libnetcdf && pip install netcdf4==1.6.5
-
 USER ${NB_USER}
 
 WORKDIR ${HOME}/.kernels
@@ -19,7 +17,5 @@ WORKDIR ${HOME}/.kernels
 RUN chmod +x install-kernels.sh && cd /home/jovyan/.kernels && ./install-kernels.sh environments
 
 
-
-
 ENV JUPYTERHUB_HTTP_REFERER=https://openscapes.2i2c.cloud/
 
diff --git a/ci/conda-linux-64.lock b/ci/conda-linux-64.lock
index ff7b135..2c71b29 100644
--- a/ci/conda-linux-64.lock
+++ b/ci/conda-linux-64.lock
@@ -1,6 +1,6 @@
 # Generated by conda-lock.
 # platform: linux-64
-# input_hash: f49294bbbf4c3ccfd17b55079e120a2ca18740996ecbb362d6549d8c79705048
+# input_hash: aafcdd1bd89a58b40ff541d125246ff289eaacfa39c933cf45706cf2dd4d761f
 @EXPLICIT
 https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81
 https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2024.2.2-hbcca054_0.conda#2f4327a1cbe7f022401b236e915a5fef
diff --git a/ci/environment.yml b/ci/environment.yml
index f4d1594..b45a290 100644
--- a/ci/environment.yml
+++ b/ci/environment.yml
@@ -11,7 +11,7 @@ dependencies:
   - xarray>=2023.12
   - h5netcdf
   - h5py
-  # - gdal>=3.8
+  - gdal>=3.8
   - geoviews
   - holoviews=1.16.2
   - matplotlib-base
diff --git a/ci/environments/opendap/environment.yml b/ci/environments/opendap/environment.yml
new file mode 100644
index 0000000..ab9c4d9
--- /dev/null
+++ b/ci/environments/opendap/environment.yml
@@ -0,0 +1,64 @@
+name: opendap
+channels:
+  - conda-forge
+dependencies:
+  - python=3.10
+  - xarray=2024.1.0
+  - certifi=2023.11.17
+  - cftime=1.6.3
+  - dask
+  - dask-gateway
+  - graphviz
+  - distributed
+  - rioxarray
+  - h5py>= 3.9
+  - geoviews
+  - matplotlib-base
+  - seaborn
+  - hvplot
+  - datashader
+  - pyproj
+  - bqplot
+  - geopandas
+  - zarr
+  - cartopy
+  - pynco
+  - rasterio
+  - shapely
+  - pyresample
+  - joblib
+  - pystac-client
+  - pydap
+  - lxml
+  - ipyleaflet
+  - dask-labextension
+  - jupyter-server-proxy
+  - ipywidgets
+  - jupyter-book
+  - jupyterlab>4
+  - jupyterlab-myst
+  - jupyterhub-singleuser
+  - jupyterlab-geojson
+  - jupyterlab-favorites
+  - jupyterlab-git
+  - jupyter-resource-usage
+  - jupyterlab-h5web
+  - hdf5plugin
+  - ipympl
+  - pooch
+  - earthaccess>=0.8.2
+  - pqdm
+  - spectral
+  - s3fs
+  - nbgitpuller
+  - awscliv2
+  - jupyter-server-proxy
+  - jupyter-vscode-proxy
+  # https://github.com/jupyterlab/jupyter-collaboration/issues/202
+  # - jupyter-collaboration
+  - code-server >=3.2
+  - pip
+  - pip:
+    - netcdf4==1.6.5
+platforms:
+  - linux-64
diff --git a/ci/environments/opendap/name.txt b/ci/environments/opendap/name.txt
new file mode 100644
index 0000000..3ad62c1
--- /dev/null
+++ b/ci/environments/opendap/name.txt
@@ -0,0 +1 @@
+opendap
diff --git a/ci/requirements.txt b/ci/requirements.txt
index 74d020f..11deafe 100644
--- a/ci/requirements.txt
+++ b/ci/requirements.txt
@@ -3,3 +3,4 @@ xq
 jupyterlab-quarto
 jupyter-desktop-server==0.1.3
 graphviz
+netcdf4==1.6.5