diff --git a/BOSC_2008.md b/BOSC_2008.md
index 9be8ad2f..1e096077 100644
--- a/BOSC_2008.md
+++ b/BOSC_2008.md
@@ -86,7 +86,7 @@ posted](BOSC_2008_schedule "wikilink").
You may also download the entire BOSC program with the schedule and all
abstracts as a [PDF
-file](http://www.open-bio.org/w/images/b/b6/BOSC2008_program.pdf)
+file](BOSC2008_program.pdf)
(1971KB).
## Important Information for Presenters
diff --git a/BOSC_2008_schedule.md b/BOSC_2008_schedule.md
index f61b641c..830fe7d0 100644
--- a/BOSC_2008_schedule.md
+++ b/BOSC_2008_schedule.md
@@ -6,7 +6,7 @@ layout: wiki
You may also download the entire BOSC program with the schedule and all
abstracts as a [PDF
-file](http://www.open-bio.org/w/images/b/b6/BOSC2008_program.pdf)
+file](BOSC2008_program.pdf)
(1971KB).
Return to [ BOSC2008](BOSC_2008 "wikilink") main page.
@@ -141,7 +141,7 @@ Collaboration
\[cyberinfrastructure\]
-` Mobyle: a New Full Web Bioinformatics Framework `[`Abstract`](http://www.open-bio.org/w/images/c/c7/Menager_Mobyle_abstract.pdf)` `[`**SLIDES**`](http://www.slideshare.net/bosc_2008/menager-mobyle-bosc2008/)
+` Mobyle: a New Full Web Bioinformatics Framework `[`Abstract`](Menager_Mobyle_abstract.pdf)` `[`**SLIDES**`](http://www.slideshare.net/bosc_2008/menager-mobyle-bosc2008/)
@@ -168,7 +168,7 @@ Collaboration
\[cyberinfrastructure\]
-` Intermine – Open Source Data Warehouse and Query Interface `[`Abstract`](http://www.open-bio.org/w/images/e/e5/Smith_R_Intermine_abstract.pdf)` `[`**SLIDES**`](http://www.slideshare.net/bosc_2008/smith-inter-mine-bosc2008/)
+` Intermine – Open Source Data Warehouse and Query Interface `[`Abstract`](Smith_R_Intermine_abstract.pdf)` `[`**SLIDES**`](http://www.slideshare.net/bosc_2008/smith-inter-mine-bosc2008/)
@@ -197,7 +197,7 @@ Collaboration
\[cyberinfrastructure\] Bridging
-` Existing Bioinformatics Tools and Data into Semantic Web Services `[`Abstract`](http://www.open-bio.org/w/images/6/69/Gordon_SemanticWeb_abstract.pdf)` `[`**SLIDES**`](http://www.slideshare.net/bosc_2008/gordon-semantic-web-2008/)
+` Existing Bioinformatics Tools and Data into Semantic Web Services `[`Abstract`](Gordon_SemanticWeb_abstract.pdf)` `[`**SLIDES**`](http://www.slideshare.net/bosc_2008/gordon-semantic-web-2008/)
@@ -226,7 +226,7 @@ Collaboration
\[cyberinfrastructure\]
-` Soaplab2: More Reliable Sesame Door to Bioinformatics Programs `[`Abstract`](http://www.open-bio.org/w/images/3/3c/Rice_Soaplab2_abstract.pdf)
+` Soaplab2: More Reliable Sesame Door to Bioinformatics Programs `[`Abstract`](Rice_Soaplab2_abstract.pdf)
@@ -276,7 +276,7 @@ Collaboration
\[cyberinfrastructure\]
` BeeSpace:`` ``An Interactive System for`
-` Functional Analysis `[`Abstract`](http://www.open-bio.org/w/images/2/27/Sanders_Arcoleo_BeeSpace_abstract.pdf)[`**SLIDES** (PPT)`](http://www.beespace.uiuc.edu/files/BeeSpaceBOSC2008_v3.ppt)
+` Functional Analysis `[`Abstract`](Sanders_Arcoleo_BeeSpace_abstract.pdf)[`**SLIDES** (PPT)`](http://www.beespace.uiuc.edu/files/BeeSpaceBOSC2008_v3.ppt)
@@ -305,7 +305,7 @@ Collaboration
\[cyberinfrastructure\]
-` BioDas Project Update `[`Abstract`](http://www.open-bio.org/w/images/6/6c/Jenkinson_BioDas_abstract.pdf)` `[`**SLIDES**`](http://www.slideshare.net/bosc_2008/andy-jenkinson-bosc-das-2008/)
+` BioDas Project Update `[`Abstract`](Jenkinson_BioDas_abstract.pdf)` `[`**SLIDES**`](http://www.slideshare.net/bosc_2008/andy-jenkinson-bosc-das-2008/)
@@ -335,7 +335,7 @@ Collaboration
\[visualization\] E-Cell 3D:
3-Dimensional
-` Visualization of Dynamic Cell Simulation `[`Abstract`](http://www.open-bio.org/w/images/2/20/Arakawa_E-Cell3D_abstract.pdf)` `[`**SLIDES**`](http://www.g-language.org/data/gaou/presentation/BOSC08-ECell3D.pdf)
+` Visualization of Dynamic Cell Simulation `[`Abstract`](Arakawa_E-Cell3D_abstract.pdf)` `[`**SLIDES**`](http://www.g-language.org/data/gaou/presentation/BOSC08-ECell3D.pdf)
@@ -362,7 +362,7 @@ Collaboration
\[bio\*update\] EMBOSS:
-` European Molecular Biology Open Software Suite `[`Abstract`](http://www.open-bio.org/w/images/c/ca/Rice_EMBOSS_abstract.pdf)
+` European Molecular Biology Open Software Suite `[`Abstract`](Rice_EMBOSS_abstract.pdf)
@@ -391,7 +391,7 @@ Collaboration
\[bio\*update\] BioJava
-` Project Update `[`Abstract`](http://www.open-bio.org/w/images/1/10/Heuer_BioJava_abstract.pdf)` `[`**SLIDES**`](http://www.slideshare.net/bosc_2008/heuer-bio-java-bosc2008/)
+` Project Update `[`Abstract`](Heuer_BioJava_abstract.pdf)` `[`**SLIDES**`](http://www.slideshare.net/bosc_2008/heuer-bio-java-bosc2008/)
@@ -420,7 +420,7 @@ Collaboration
\[lightning talk\] Use the
-` Make Utility for the Maintenance of Complex Bioinformatics Pipelines `[`Abstract`](http://www.open-bio.org/w/images/a/a9/Wilson_Make_abstract.pdf)` `[`**SLIDES**`](http://www.slideshare.net/bosc_2008/wilson-make-bosc2008/)` `
+` Make Utility for the Maintenance of Complex Bioinformatics Pipelines `[`Abstract`](Wilson_Make_abstract.pdf)` `[`**SLIDES**`](http://www.slideshare.net/bosc_2008/wilson-make-bosc2008/)` `
@@ -449,7 +449,7 @@ Collaboration
\[lightning talk\] SolexaTools: An Open
Source Sequence Analysis Framework
-[Abstract](http://www.open-bio.org/w/images/6/63/OConnor_SolexaTools_abstract.pdf)
+[Abstract](OConnor_SolexaTools_abstract.pdf)
[\*\*SLIDES\*\*](http://www.slideshare.net/bosc_2008/o-connor-solexa-tools-bosc2008/)
@@ -573,7 +573,7 @@ Arial'>Schedule (Day 2)
\[workflows\] Interoperability
-` with BioMoby – Past, Present, and Future `[`Abstract`](http://www.open-bio.org/w/images/d/da/Wilkinson_BioMoby_abstract.pdf)
+` with BioMoby – Past, Present, and Future `[`Abstract`](Wilkinson_BioMoby_abstract.pdf)
@@ -601,7 +601,7 @@ Arial'>Schedule (Day 2)
\[workflows\] Ergatis: A
` Web-based Bioinformatics Pipeline Management and Collaborative Development`
-` System `[`Abstract`](http://www.open-bio.org/w/images/5/59/Orvis_Ergatis_abstract.pdf)
+` System `[`Abstract`](Orvis_Ergatis_abstract.pdf)
@@ -628,7 +628,7 @@ Arial'>Schedule (Day 2)
\[workflows\] Chipster – User
-` Friendly DNA Microarray Analysis Software `[`Abstract`](http://www.open-bio.org/w/images/7/7e/Kallio_Chipster_abstract.pdf)` `[`**SLIDES**`](http://www.slideshare.net/bosc_2008/kallio-chipster-bosc2008/)
+` Friendly DNA Microarray Analysis Software `[`Abstract`](Kallio_Chipster_abstract.pdf)` `[`**SLIDES**`](http://www.slideshare.net/bosc_2008/kallio-chipster-bosc2008/)
@@ -677,7 +677,7 @@ Arial'>Schedule (Day 2)
\[workflows\] myExperiment:
-` Social Software for Sharing Workflows `[`Abstract`](http://www.open-bio.org/w/images/7/75/Bhagat_myExperiment_abstract.pdf)` `[`**SLIDES**`](http://www.slideshare.net/bosc_2008/bhagat-myexperiment-bosc2008/)
+` Social Software for Sharing Workflows `[`Abstract`](Bhagat_myExperiment_abstract.pdf)` `[`**SLIDES**`](http://www.slideshare.net/bosc_2008/bhagat-myexperiment-bosc2008/)
@@ -704,7 +704,7 @@ Arial'>Schedule (Day 2)
\[workflows\] BioHDF: Open Binary
-` File Formats for Large Scale Data Management `[`Abstract`](http://www.open-bio.org/w/images/2/22/Smith_T_BioHDF_Abstract_revised.pdf)` `[`**SLIDES**`](http://www.slideshare.net/bosc_2008/smith-t-bio-hdf-bosc2008/)
+` File Formats for Large Scale Data Management `[`Abstract`](Smith_T_BioHDF_Abstract_revised.pdf)` `[`**SLIDES**`](http://www.slideshare.net/bosc_2008/smith-t-bio-hdf-bosc2008/)
@@ -732,7 +732,7 @@ Arial'>Schedule (Day 2)
\[open source software\] The
` Open HeliSphere``TM`` Project: True Open Source from the Inventors of`
-` True Single Molecule Sequencing `[`Abstract`](http://www.open-bio.org/w/images/f/fb/Kitzmiller_OpenHeliSphere_abstract.pdf)` `[`**SLIDES**`](http://www.slideshare.net/bosc_2008/kitzmiller-openhelisphereproject-bosc2008/)
+` True Single Molecule Sequencing `[`Abstract`](Kitzmiller_OpenHeliSphere_abstract.pdf)` `[`**SLIDES**`](http://www.slideshare.net/bosc_2008/kitzmiller-openhelisphereproject-bosc2008/)
@@ -759,7 +759,7 @@ Arial'>Schedule (Day 2)
\[open source software\]
-` Apollo: a Sequence Annotation Editor (with demonstration to follow) `[`Abstract`](http://www.open-bio.org/w/images/3/3a/Lee_Apollo_abstract.pdf)` `[`**SLIDES**`](http://www.slideshare.net/bosc_2008/lee-apollo-bosc2008/)
+` Apollo: a Sequence Annotation Editor (with demonstration to follow) `[`Abstract`](Lee_Apollo_abstract.pdf)` `[`**SLIDES**`](http://www.slideshare.net/bosc_2008/lee-apollo-bosc2008/)
@@ -808,7 +808,7 @@ Arial'>Schedule (Day 2)
\[bio\*update\] BioSQL
-` Reloaded: 1.0 Release, PhyloDB Module, and Future Features `[`Abstract`](http://www.open-bio.org/w/images/3/3b/Lapp_BioSQL_abstract.pdf)` `[`**SLIDES**`](http://www.slideshare.net/hlapp/lapp-biosql-bosc2008)
+` Reloaded: 1.0 Release, PhyloDB Module, and Future Features `[`Abstract`](Lapp_BioSQL_abstract.pdf)` `[`**SLIDES**`](http://www.slideshare.net/hlapp/lapp-biosql-bosc2008)
@@ -837,7 +837,7 @@ Arial'>Schedule (Day 2)
\[bio\*update\] EMBRACE –
-` BioMart Developments and Future `[`Abstract`](http://www.open-bio.org/w/images/1/10/Haider_EMBRACE_abstract.pdf)` `[`**SLIDES**`](http://www.slideshare.net/bosc_2008/haider-embrace-bosc2008/)
+` BioMart Developments and Future `[`Abstract`](Haider_EMBRACE_abstract.pdf)` `[`**SLIDES**`](http://www.slideshare.net/bosc_2008/haider-embrace-bosc2008/)
@@ -866,7 +866,7 @@ Arial'>Schedule (Day 2)
\[bio\*update\] Biopython
-` Project Update 2008 `[`Abstract`](http://www.open-bio.org/w/images/e/e3/Antao_Biopython_abstract.pdf)` `[`**SLIDES**`](http://www.slideshare.net/bosc_2008/antao-biopython-bosc2008/)
+` Project Update 2008 `[`Abstract`](Antao_Biopython_abstract.pdf)` `[`**SLIDES**`](http://www.slideshare.net/bosc_2008/antao-biopython-bosc2008/)
diff --git a/BOSC_2014.md b/BOSC_2014.md
index 0d63a17b..3a3b3966 100644
--- a/BOSC_2014.md
+++ b/BOSC_2014.md
@@ -34,7 +34,7 @@ Brad Chapman's [blog
posts](http://smallchangebio.wordpress.com/2014/07/11/notes-bioinformatics-open-source-conference-2014-day-1-afternoon-visualization-project-updates-and-lightning-talks/)
[BioInform article about Philip Bourne's keynote
-talk](http://www.open-bio.org/w/images/d/dd/Bosc2014-bioinform.pdf)
+talk](Bosc2014-bioinform.pdf)
(posted with permission)
[James Malone's blog
diff --git a/BOSC_2015_Schedule.md b/BOSC_2015_Schedule.md
index bbf9cb37..d6008898 100644
--- a/BOSC_2015_Schedule.md
+++ b/BOSC_2015_Schedule.md
@@ -22,7 +22,7 @@ playlist](https://www.youtube.com/playlist?list=PLir-OOQiOhXbENjAIFF-JZ0WodnysPq
The full program including abstracts is available
[here](http://www.open-bio.org/bosc2015/BOSC2015-program-with-abstracts.pdf).
The PDF of this schedule (without abstracts) is available
-[here](http://www.open-bio.org/w/images/2/2c/BOSC2015-schedule.pdf).
+[here](BOSC2015-schedule.pdf).
## Sponsors
diff --git a/Codefest_2010.md b/Codefest_2010.md
index e0255317..5f662e8f 100644
--- a/Codefest_2010.md
+++ b/Codefest_2010.md
@@ -37,7 +37,7 @@ environments like [Amazon Elastic Compute
Cloud](http://aws.amazon.com/ec2/) and
[Eucalyptus](http://open.eucalyptus.com/). Ntino has written up an
excellent project proposal available for [download in pdf
-format](http://www.open-bio.org/w/images/8/85/BOSC_2010_Cloud_BioLinux.pdf).
+format](BOSC_2010_Cloud_BioLinux.pdf).
Initial work has started to develop an automated build environment that
incorporates the [Cloud
@@ -89,7 +89,7 @@ technology.
left. When you arrive, the security guard should have your name, but
if not, tell him you are attending the Hackathon and he will let you
through. If you get lost use the [PDF
- map](http://www.open-bio.org/w/images/2/25/Brigham_Circle_-_Countway_Map.pdf)
+ map](Brigham_Circle_-_Countway_Map.pdf)
as a guide.