auto3dseg_autorunner_ref_api.ipynb -----> error

[Alisoltan82]

while using monai auto3dseg and during training, this error appeared, for your kind advice if anyone faces the same error.

[/content/WORK/algorithm_templates/dints/scripts/algo.py](https://localhost:8080/#) in train(self, train_params, device_setting, search)
    488         cmd, devices_info = self._create_cmd(dints_train_params)
    489         cmd = "OMP_NUM_THREADS=1 " + cmd
--> 490         return self._run_cmd(cmd, devices_info)

[/usr/local/lib/python3.10/dist-packages/monai/apps/auto3dseg/bundle_gen.py](https://localhost:8080/#) in _run_cmd(self, cmd, devices_info)
    253             )
    254         else:
--> 255             return run_cmd(cmd.split(), run_cmd_verbose=True, env=ps_environ, check=True)
    256 
    257     def train(

[/usr/local/lib/python3.10/dist-packages/monai/utils/misc.py](https://localhost:8080/#) in run_cmd(cmd_list, **kwargs)
    872         monai.apps.utils.get_logger("run_cmd").info(f"{cmd_list}")
    873     try:
--> 874         return subprocess.run(cmd_list, **kwargs)
    875     except subprocess.CalledProcessError as e:
    876         if not debug:

CalledProcessError: Command '['python', '/content/WORK/dints_0/scripts/train.py', 'run', "--config_file='/content/WORK/dints_0/configs/hyper_parameters.yaml,/content/WORK/dints_0/configs/hyper_parameters_search.yaml,/content/WORK/dints_0/configs/network.yaml,/content/WORK/dints_0/configs/network_search.yaml,/content/WORK/dints_0/configs/transforms_infer.yaml,/content/WORK/dints_0/configs/transforms_train.yaml,/content/WORK/dints_0/configs/transforms_validate.yaml'"]' returned non-zero exit status 1.

Thanks

[KumoLiu]

Hi @Alisoltan82, can't reproduce the issue. Did you ensure the work dir is the right path?
Something like this.

[Alisoltan82]

also, according to the proposed solution in this link
#975 (comment)

I received this error below

[KumoLiu]

You may use these code to get algo.

for algo_dict in history:
    algo = algo_dict[AlgoKeys.ALGO]
    algo.fill_records = dict((prefix + key, value) if key.startswith(("network", "transform")) \
                                    else (key, value) for (key, value) in algo.fill_records.items())

[Alisoltan82]

snippet worked but received the same error in algo.train()

CalledProcessError                        Traceback (most recent call last)
[<ipython-input-32-5245db118532>](https://localhost:8080/#) in <cell line: 1>()
      1 for algo_dict in history:
      2     algo = algo_dict[AlgoKeys.ALGO]
----> 3     algo.train()
      4     acc = algo.get_score()
      5     algo_to_pickle(algo, template_path=algo.template_path, best_metric=acc)

3 frames
[/content/WORK/algorithm_templates/dints/scripts/algo.py](https://localhost:8080/#) in train(self, train_params, device_setting, search)
    488         cmd, devices_info = self._create_cmd(dints_train_params)
    489         cmd = "OMP_NUM_THREADS=1 " + cmd
--> 490         return self._run_cmd(cmd, devices_info)
    491 
    492 

[/usr/local/lib/python3.10/dist-packages/monai/apps/auto3dseg/bundle_gen.py](https://localhost:8080/#) in _run_cmd(self, cmd, devices_info)
    253             )
    254         else:
--> 255             return run_cmd(cmd.split(), run_cmd_verbose=True, env=ps_environ, check=True)
    256 
    257     def train(

[/usr/local/lib/python3.10/dist-packages/monai/utils/misc.py](https://localhost:8080/#) in run_cmd(cmd_list, **kwargs)
    872         monai.apps.utils.get_logger("run_cmd").info(f"{cmd_list}")
    873     try:
--> 874         return subprocess.run(cmd_list, **kwargs)
    875     except subprocess.CalledProcessError as e:
    876         if not debug:

[/usr/lib/python3.10/subprocess.py](https://localhost:8080/#) in run(input, capture_output, timeout, check, *popenargs, **kwargs)
    524         retcode = process.poll()
    525         if check and retcode:
--> 526             raise CalledProcessError(retcode, process.args,
    527                                      output=stdout, stderr=stderr)
    528     return CompletedProcess(process.args, retcode, stdout, stderr)

CalledProcessError: Command '['python', '/content/WORK/dints_0/scripts/train.py', 'run', "--config_file='/content/WORK/dints_0/configs/hyper_parameters.yaml,/content/WORK/dints_0/configs/hyper_parameters_search.yaml,/content/WORK/dints_0/configs/m_network.yaml,/content/WORK/dints_0/configs/m_network_search.yaml,/content/WORK/dints_0/configs/m_transforms_infer.yaml,/content/WORK/dints_0/configs/m_transforms_train.yaml,/content/WORK/dints_0/configs/m_transforms_validate.yaml'"]' returned non-zero exit status 1.

Do you recommend something to revise?

[Alisoltan82]

most probably I have something in datalist file , I'll revise

[KumoLiu]

Could you please try the command in the terminal to see whether it can run successfully? I cannot reproduce the issue.

[Alisoltan82]

something wrong here

[Alisoltan82]

Thanks for your efforts @KumoLiu
I shared the repo to check whenever possible

https://github.com/Alisoltan82/autseg3d/blob/4a5694142307c943c5c283d6270066369865f853/auto3dsegmonai.ipynb

[Alisoltan82]

resolved

all the training data were fold:0, I didn't create folds in the training data and once done it works fine.