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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(backwardPhenotypeSelection)
export(discoverPhenotypes)
export(faust)
export(forwardPhenotypeSelection)
export(generateAnnotationThresholds)
export(getCountsForTargetMarkers)
export(getMMIForTargetMarker)
export(growAnnotationForest)
export(makeAnnotationEmbedding)
export(mkAFPlotsForExpUnit)
export(plotClusterRidgesInSample)
export(plotFaustGates)
import(tidyr)
importFrom(Biobase,AnnotatedDataFrame)
importFrom(Biobase,pData)
importFrom(Rcpp,sourceCpp)
importFrom(bit,bitwhich)
importFrom(cowplot,save_plot)
importFrom(data.table,fwrite)
importFrom(dplyr,group_by)
importFrom(dplyr,inner_join)
importFrom(dplyr,left_join)
importFrom(dplyr,summarize)
importFrom(fdrtool,gcmlcm)
importFrom(flowCore,exprs)
importFrom(flowCore,parameters)
importFrom(flowWorkspace,getData)
importFrom(flowWorkspace,gh_pop_get_data)
importFrom(flowWorkspace,sampleNames)
importFrom(ggplot2,aes)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,coord_cartesian)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_text)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_hex)
importFrom(ggplot2,geom_histogram)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_segment)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggsave)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_linetype_manual)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(ggridges,geom_density_ridges)
importFrom(ggridges,position_points_jitter)
importFrom(grDevices,nclass.FD)
importFrom(scamp,scamp)
importFrom(stats,density)
importFrom(stats,mad)
importFrom(stats,median)
importFrom(stats,p.adjust)
importFrom(stats,qt)
importFrom(stats,quantile)
importFrom(stats,rnorm)
importFrom(stats,runif)
importFrom(stats,sd)
importFrom(stats,weighted.mean)
importFrom(tidyr,gather)
importFrom(utils,globalVariables)
importFrom(utils,read.table)
importFrom(uwot,umap)
importFrom(viridis,magma)
importFrom(viridis,scale_fill_viridis)
importFrom(viridis,viridis)
importFrom(whisker,whisker.render)
useDynLib(faust, .registration = TRUE)