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test-modules-de.R
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test-modules-de.R
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if (!exists("context_of")) source("initialize.R")
# test functions ---------------------------------------------------------------
test_data_explorer <- function(applyFilter = FALSE) {
page_url <- paste0(site_url, "/DataExplorer/Studies/SDY269/begin.view")
context_of(
"test-modules-de.R",
paste0("Data Explorer (applyFilter = ", applyFilter, ")"),
page_url
)
test_connection(remDr, page_url, "Data Explorer: /Studies/SDY269")
test_module("'Data Explorer'")
test_tabs(c("Input / View", "Data", "About", "Help"))
test_that("parameters are present", {
sleep_for(3)
# parameters
parameters <- remDr$findElements("class", value = "ui-test-parameters")
expect_equal(length(parameters), 1)
formItems <- parameters[[1]]$findChildElements(using = "class", value = "x-form-item")
expect_equal(length(formItems), 4)
# parameters: dataset
dataset_input <- formItems[[1]]$findChildElements(using = "class", value = "ui-test-dataset")
expect_equal(length(dataset_input), 1)
dataset_arrow <- formItems[[1]]$findChildElements(using = "class", value = "x-form-arrow-trigger")
expect_equal(length(dataset_arrow), 1)
dataset_arrow[[1]]$clickElement()
sleep_for(1)
dataset_list <- remDr$findElements(using = "css selector", value = "div.x-combo-list[style*='visibility: visible']")
expect_equal(length(dataset_list), 1)
if (length(dataset_list) == 1) {
dataset_actual <- strsplit(dataset_list[[1]]$getElementText()[[1]], "\n")[[1]]
dataset_expected <- c(
"Enzyme-linked immunosorbent assay (ELISA)",
"Enzyme-Linked ImmunoSpot (ELISPOT)",
"Flow cytometry analyzed results",
"Hemagglutination inhibition (HAI)",
"Polymerisation chain reaction (PCR)",
"Gene expression"
)
expect_equal(
setdiff(dataset_actual, dataset_expected), character(0),
info = paste(
c("Unexpected datasets:", setdiff(dataset_actual, dataset_expected)),
collapse = "\n"
)
)
expect_equal(
setdiff(dataset_expected, dataset_actual), character(0),
info = paste(
c("Missing datasets:", setdiff(dataset_expected, dataset_actual)),
collapse = "\n"
)
)
}
dataset_clear <- formItems[[1]]$findChildElements("class", "x-form-clear-trigger")
expect_equal(length(dataset_clear), 1)
dataset_clear[[1]]$clickElement()
sleep_for(1)
# parameters: plot type
plotType <- formItems[[2]]$findChildElements(using = "class", value = "ui-test-plottype")
expect_equal(length(plotType), 1)
plotType_arrow <- formItems[[2]]$findChildElements(using = "class", value = "x-form-arrow-trigger")
expect_equal(length(plotType_arrow), 1)
plotType_arrow[[1]]$clickElement()
sleep_for(1)
plotType_list <- remDr$findElements(using = "css selector", value = "div.x-combo-list[style*='visibility: visible']")
expect_equal(
plotType_list[[1]]$getElementText()[[1]],
"Auto\nBoxplot\nViolin plot\nHeatmap\nLineplot"
)
plotType_clear <- formItems[[2]]$findChildElements(using = "class", value = "x-form-clear-trigger")
expect_equal(length(plotType_clear), 1)
plotType_clear[[1]]$clickElement()
sleep_for(1)
# parameters: normalize
normalize <- formItems[[3]]$findChildElements(using = "class", value = "ui-test-normalize")
expect_equal(length(normalize), 1)
# parameters: show strains
showStrains <- formItems[[4]]$findChildElements(using = "class", value = "ui-test-showstrains")
expect_equal(length(showStrains), 1)
# additional options
additionalOptions <- remDr$findElements(using = "class", value = "ui-test-additional-options")
expect_equal(length(additionalOptions), 1)
additionalOptions_header <- additionalOptions[[1]]$findChildElements(using = "class", value = "x-fieldset-header")
additionalOptions_header[[1]]$clickElement()
sleep_for(1)
interactivePlot <- additionalOptions[[1]]$findChildElements(using = "class", value = "ui-test-interactive")
expect_equal(length(interactivePlot), 1)
textSize <- additionalOptions[[1]]$findChildElements(using = "class", value = "ui-test-textsize")
expect_equal(length(textSize), 1)
horizontal <- additionalOptions[[1]]$findChildElements(using = "class", value = "ui-test-horizontal")
expect_equal(length(horizontal), 1)
vertical <- additionalOptions[[1]]$findChildElements(using = "class", value = "ui-test-vertical")
expect_equal(length(vertical), 1)
additionalOptions_header[[1]]$clickElement()
sleep_for(1)
# buttons
buttons_bar <- remDr$findElements(using = "class", value = "ui-test-buttons")
expect_equal(length(buttons_bar), 1)
plot_button_table <- buttons_bar[[1]]$findChildElements(using = "class", value = "ui-test-plot")
expect_equal(length(plot_button_table), 1)
plot_button <- plot_button_table[[1]]$findChildElements(using = "class", value = "x-btn-text")
expect_equal(length(plot_button), 1)
expect_equal(plot_button[[1]]$getElementText()[[1]], "Plot")
reset_button_table <- buttons_bar[[1]]$findChildElements(using = "class", value = "ui-test-reset")
expect_equal(length(reset_button_table), 1)
reset_button <- reset_button_table[[1]]$findChildElements(using = "class", value = "x-btn-text")
expect_equal(length(reset_button), 1)
expect_equal(reset_button[[1]]$getElementText()[[1]], "Reset")
})
test_that("loading dataset is working", {
parameters <- remDr$findElements(using = "class", value = "ui-test-parameters")
formItems <- parameters[[1]]$findChildElements(using = "class", value = "x-form-item")
dataset_arrow <- formItems[[1]]$findChildElements(using = "class", value = "x-form-arrow-trigger")
dataset_arrow[[1]]$clickElement()
sleep_for(1)
dataset_list <- remDr$findElements(using = "css selector", value = "div.x-combo-list[style*='visibility: visible']")
dataset_elisa <- dataset_list[[1]]$findChildElements(using = "class", value = "x-combo-list-item")
dataset_elisa[[1]]$clickElement()
sleep_for(1)
while (remDr$findElements(using = "class", value = "ui-test-cmpstatus")[[1]]$getElementText()[[1]] == "") sleep_for(1)
tab_header <- remDr$findElements(using = "class", value = "x-tab-panel-header")
tabs <- tab_header[[1]]$findChildElements(using = "css selector", value = "li[id^=ext-comp]")
# switch to "Data" tab
tabs[[2]]$clickElement()
sleep_for(1)
headers <- remDr$findElements(using = "css selector", value = "[id$=-column-header-row]")
if (headers[[1]]$getElementText()[[1]] != "") {
headers_text <- strsplit(headers[[1]]$getElementText()[[1]], split = " ")[[1]]
headers_text <- strsplit(headers_text[length(headers_text)], split = "\n")[[1]]
} else {
headers_text <- headers[[1]]$getElementText()[[1]]
}
expect_equal(
headers_text,
c(
"Participant ID", "Age Reported", "Gender", "Race", "Cohort",
"Analyte", "Study Time Collected", "Study Time Collected Unit",
"Value Preferred", "Unit Reported"
)
)
if (applyFilter) {
test_filtering()
}
# back to "Input / View" tab
tabs[[1]]$clickElement()
sleep_for(1)
})
test_that("selecting plot type is working", {
parameters <- remDr$findElements(using = "class", value = "ui-test-parameters")
formItems <- parameters[[1]]$findChildElements(using = "class", value = "x-form-item")
plotType_arrow <- formItems[[2]]$findChildElements(using = "class", value = "x-form-arrow-trigger")
plotType_arrow[[1]]$clickElement()
sleep_for(1)
plotType_list <- remDr$findElements(using = "css selector", value = "div.x-combo-list[style*='visibility: visible']")
plotType_heatmap <- plotType_list[[1]]$findChildElements(using = "class", value = "x-combo-list-item")
plotType_heatmap[[4]]$clickElement()
sleep_for(1)
plotType <- formItems[[2]]$findChildElements(using = "class", value = "ui-test-plottype")
expect_equal(plotType[[1]]$getElementAttribute("value")[[1]], "Heatmap")
})
test_that("plot and reset buttons are working", {
buttons_bar <- remDr$findElements(using = "class", value = "ui-test-buttons")
plot_button_table <- buttons_bar[[1]]$findChildElements(using = "class", value = "ui-test-plot")
plot_button <- plot_button_table[[1]]$findChildElements(using = "class", value = "x-btn-text")
plot_button[[1]]$clickElement()
sleep_for(1)
# check if output is there
while (length(remDr$findElements(using = "class", value = "ext-el-mask-msg")) != 0) sleep_for(1)
visualization <- remDr$findElements(using = "css selector", value = "img[id*=imgModuleHtmlView_]")
expect_equal(length(visualization), 1)
reset_button_table <- buttons_bar[[1]]$findChildElements(using = "class", value = "ui-test-reset")
reset_button <- reset_button_table[[1]]$findChildElements(using = "class", value = "x-btn-text")
reset_button[[1]]$clickElement()
sleep_for(1)
# check if plot is clear
no_visualization <- remDr$findElements(using = "css selector", value = "img[id*=imgModuleHtmlView_]")
expect_equal(length(no_visualization), 0)
})
}
# run tests --------------------------------------------------------------------
test_data_explorer()
test_data_explorer(applyFilter = TRUE)