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About the brainreg plugin for napari |
brainreg is software for the registration of whole-brain microscopy datasets to a reference atlas. This allows the brain to be segmented into individual regions based on the atlas, and for all data to be warped to a common anatomical reference frame.
To simplify use, we have created a plugin for napari, so that brainreg can be installed and used without touching the command line.
{% hint style="info" %} This page is about the plugin specifically, for more details about brainreg more generally, see the main page. {% endhint %}
First install napari. You can then install the plugin from within napari (Plugins -> Install/Uninstall Package(s), choosing brainreg-napari).
{% hint style="warning" %} N.B. brainreg is only fully supported on Windows and Linux (i.e. not macOS) {% endhint %}
Please see the User guide, and the Tutorial.