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About the standalone Python package for efficient cell detection in large images. |
cellfinder-core is a Python package implementing the core algorithm for efficient cell detection in large images. It's used by the main cellfinder software and the Napari plugin.
The package exists on it's own to allow developers to implement the algorithm in their own software, e.g. to analyse different types of data (not catered to by the main cellfinder package).
For now, the only API documentation is in the GitHub README, please see the main cellfinder documentation for an explanation of some of the parameters. Alternatively, raise an issue on the GitHub repository, or ask a question on the forum.