1a simulation for hs2.ipynb

{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": 1,
   "metadata": {},
   "outputs": [],
   "source": [
    "from simulation_manager import *"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {},
   "outputs": [],
   "source": [
    "from epi_model import *"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "metadata": {},
   "outputs": [],
   "source": [
    "from simulation_helper import *"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "metadata": {},
   "outputs": [],
   "source": [
    "argset = argset1 + argset2 + argset3"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "metadata": {},
   "outputs": [],
   "source": [
    "# when new\n",
    "\n",
    "manager = simulation_manager()\n",
    "#manager.load_net('high school 2')\n",
    "\n",
    "manager.load_models('HS2')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 7,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "4"
      ]
     },
     "execution_count": 7,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "4"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 6,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "starting at 390\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/Users/alecmcgail/envs/epi/lib/python3.8/site-packages/networkx/linalg/graphmatrix.py:187: FutureWarning: adjacency_matrix will return a scipy.sparse array instead of a matrix in Networkx 3.0.\n",
      "  return adjacency_matrix(G, nodelist, dtype, weight)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Checkpointing after 390/500 simulations\n",
      "Checkpointing after 420/500 simulations\n",
      "Checkpointing after 450/500 simulations\n",
      "Checkpointing after 480/500 simulations\n",
      "Checkpointing after 510/500 simulations\n"
     ]
    }
   ],
   "source": [
    "manager.run_and_checkpoint(\n",
    "    argset, \n",
    "    N_PER=500, \n",
    "    interval=30, \n",
    "    verbose=False, \n",
    "    dump_name='HS2'\n",
    ")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 9,
   "metadata": {},
   "outputs": [],
   "source": [
    "manager.dump_models('HS2')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "manager.summarize_models()"
   ]
  }
 ],
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