GitHub - aswarren/Batch-Fasta-Interpro: Run interproscan on a multi-sequence fasta file via EBI webservices.

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Run interproscan on a multi-sequence fasta file via EBI webservices.

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Name		Name	Last commit message	Last commit date
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README		README
multi_interpro.py		multi_interpro.py
wsinterproscan.py		wsinterproscan.py

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Requires: Biopython

multi_interproscan.py provides a wrapper for wsinterproscan.py by running interproscan on an entire fasta file. It keeps the total number of concurrent interproscan sessions at the maximum number allowed at EBI (which was 25 when I wrote this).

Run the script as multi_interpro.py -i example.fasta -s wsinterproscan.py

Output: multiple interpro result files

Andrew Warren
[email protected]