index.Rmd

---
output:
  bookdown::pdf_book:
    includes:
      in_header: preamble.tex
    keep_tex: yes
    pandoc_args: [ "--csl", "_apa.csl" ] # apa citation style
  latex_engine: xelatex
  pdf_document:
    fig_caption: yes
    number_sections: yes
fontsize: 12pt
linestretch: 1.5
toc-depth: 1
secnumdepth: 5
site: "bookdown::bookdown_site"
documentclass: book
classoption: openany # This removes the blank page after ToC
geometry: "left=4cm, right=3cm, top=3cm, bottom=3cm"
header-includes:
- \usepackage{placeins}
bibliography: library/library.bib
---

\cleardoublepage

\pagestyle{fancy}
\fancyhf{}
\renewcommand{\headrulewidth}{0pt}
\fancyfoot[LE,RO]{\thepage}
\renewcommand{\floatpagefraction}{.9} <!-- This specifies that only pages with more than 90% of floats will become a figure only page -->

\setcounter{page}{9} <!-- needs to be adjusted individually depending on size of prebody -->

# Abbreviations {-}

```{r echo=FALSE, warning=FALSE}
library(tidyverse)
library(knitr)

data_frame(
  Abbreviation = c("PES", "MRI", "fMRI", "BOLD", "rIFG", "STN", "pre-SMA", "rIFC", "DDM", "RL", "RT", "2AFC", "SSRT", "ROI", "PFC", "pMFC", "ACC"),
  Term = c("Post-Error Slowing", "Magnetic Resonance Imaging", "Functional Magnetic Resonance Imaging", "Blood Oxygen Level Dependent", "Right Inferior Frontal Gyrus", "Subthalamic Nucleus", "Presupplementary Motor Area", "Right Inferior Frontal Cortex", "Drift Diffusion Model", "Reinforcement Learning", "Reaction Time", "Two-Alternative Forced Choice", "Stop Signal Reaction Time", "Region Of Interest", "Prefrontal Cortex", "Posterior Medial Frontal Cortex", "Anterior Cingulate Cortex")) %>%
  arrange(Term) %>% # i.e. alphabetical order by Term
  kable(booktab = T, linesep = c("")) # linesep command suppresses the standard 5 row chunking
```

<!-- using inkscape filename.svg --without-gui --export-pdf=filename.pdf to export from Inkscape svg files to pdf -->