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pyproject.toml
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pyproject.toml
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[build-system]
requires = ["setuptools", "versioneer[toml]"]
build-backend = "setuptools.build_meta"
[project]
name = "pybids"
description = "bids: interface with datasets conforming to BIDS"
readme = "README.md"
requires-python = ">=3.9"
license = { file="LICENSE" }
authors = [
{ name = "PyBIDS Developers", email = "[email protected]" },
]
keywords = ["BIDS", "neuroimaging"]
classifiers = [
"Development Status :: 3 - Alpha",
"Environment :: Console",
"Intended Audience :: Science/Research",
"License :: OSI Approved :: MIT License",
"Operating System :: OS Independent",
"Programming Language :: Python",
"Programming Language :: Python :: 3",
"Topic :: Scientific/Engineering",
]
dependencies = [
"numpy >=1.22", # SPEC 0 + 1yr (3yr)
"scipy >=1.8", # SPEC 0 + 1yr (3yr)
"nibabel >=4.0", # SPEC 0 + 1yr (3yr)
"pandas >=1.4.0", # SPEC 0 + 1yr (3yr)
"formulaic >=0.2.4, <0.6", # Tested on 0.2.4-0.5.2
"sqlalchemy >=1.3.16",
"bids-validator>=1.14.7", # Keep up-to-date to ensure support for recent modalities
"num2words >=0.5.5",
"click >=8.0",
"universal_pathlib >=0.2.2",
]
dynamic = ["version"]
[project.optional-dependencies]
doc = [
"sphinx >=6.2",
"numpydoc",
"sphinx_rtd_theme",
"myst_nb",
"jupytext",
]
plotting = ["graphviz"]
test = [
"pytest >=3.3",
"pytest-cov",
"bsmschema",
"coverage[toml]",
"altair",
"pytest-xdist",
"s3fs" #for testing remote uri
]
model_reports = [
"jinja2",
"altair"
]
tutorial = [
"nbconvert",
"jinja2",
"markupsafe",
"jupyter_client",
"ipykernel",
]
# Aliases
docs = ["pybids[doc]"]
tests = ["pybids[test]"]
ci_tests = ["pybids[test]"]
dev = ["pybids[doc,test,plotting]"]
[project.urls]
Homepage = "https://github.com/bids-standard/pybids"
"Bug Tracker" = "https://github.com/bids-standard/pybids/issues"
[project.scripts]
pybids = "bids.cli:cli"
[tool.versioneer]
VCS = "git"
style = "pep440-pre"
versionfile_source = "src/bids/_version.py"
versionfile_build = "bids/_version.py"
[tool.coverage.run]
branch = true
source = ["src/bids/*"]
omit = [
"*/setup.py",
"*/external/*",
"*/due.py",
"*/*version.py",
]
[tool.coverage.report]
include = ["src/bids/*"]