MashMap 3.1.3 broken

[skoren]

I've had some issues installing verkko w/mamba due to it including mashmap w/out proper dependencies. When I run mashmap it reports a missing libblis. This was broken by the recent pull request here: #51161. So a released version was broken months after release by maintenance updates, this should not be allowed in the middle of a version.

Downloading mashmap v3.1.3 build1 from here: https://anaconda.org/bioconda/mashmap/files confirms it has been linked against the blis library.

        linux-vdso.so.1 (0x00007ffda41c5000)
        /usr/local/Anaconda/envs/py3.10/lib/libbz2.so.1 (0x00001549c865f000)
        libgsl.so.25 => not found
        libblis.so.4 => not found
        libpthread.so.0 => /lib64/libpthread.so.0 (0x00001549c8289000)
        libz.so.1 => /lib64/libz.so.1 (0x00001549c8071000)
        libhts.so.3 => /usr/local/apps/samtools/1.21/lib/libhts.so.3 (0x00001549c854a000)
        libstdc++.so.6 => /usr/local/GCC/11.3.0/lib64/libstdc++.so.6 (0x00001549c7e59000)
        libm.so.6 => /lib64/libm.so.6 (0x00001549c7ad7000)
        libgcc_s.so.1 => /usr/local/GCC/11.3.0/lib64/libgcc_s.so.1 (0x00001549c8530000) 
        libc.so.6 => /lib64/libc.so.6 (0x00001549c7701000)
        /lib64/ld-linux-x86-64.so.2 (0x00001549c84a9000)
        liblzma.so.5 => /lib64/liblzma.so.5 (0x00001549c74da000)
        libbz2.so.1 => /lib64/libbz2.so.1 (0x00001549c72c9000)
        libdl.so.2 => /lib64/libdl.so.2 (0x00001549c70c5000)

However, all the dependencies list libblas not libblis in the yaml:

bioconda-recipes/recipes/mashmap/meta.yaml

Line 2 in acd1b4a

{% set github = "https://github.com/marbl/MashMap" %}

. Version 3.1.3 build0 is also linked against libblas, as expected:

        linux-vdso.so.1 (0x00007ffd4b7ae000)
        /usr/local/Anaconda/envs/py3.10/lib/libbz2.so.1 (0x0000153e69ff9000)
        libgsl.so.25 => /usr/local/gsl/2.7/gcc-11.3.0/lib/libgsl.so.25 (0x0000153e69b75000)
        libopenblas.so.0 => /usr/local/OpenBLAS/0.3.20/gcc-11.3.0/lib/libopenblas.so.0 (0x0000153e68e6c000)
        libpthread.so.0 => /lib64/libpthread.so.0 (0x0000153e68c4c000)
        libz.so.1 => /lib64/libz.so.1 (0x0000153e68a34000)
        libhts.so.3 => /usr/local/apps/samtools/1.21/lib/libhts.so.3 (0x0000153e69ee4000)
        libstdc++.so.6 => /usr/local/GCC/11.3.0/lib64/libstdc++.so.6 (0x0000153e6881c000)
        libm.so.6 => /lib64/libm.so.6 (0x0000153e6849a000)
        libgcc_s.so.1 => /usr/local/GCC/11.3.0/lib64/libgcc_s.so.1 (0x0000153e69eca000)
        libc.so.6 => /lib64/libc.so.6 (0x0000153e680c4000)
        libgfortran.so.5 => /usr/local/GCC/11.3.0/lib64/libgfortran.so.5 (0x0000153e67e14000)
        /lib64/ld-linux-x86-64.so.2 (0x0000153e69e42000)
        liblzma.so.5 => /lib64/liblzma.so.5 (0x0000153e67bed000)
        libbz2.so.1 => /lib64/libbz2.so.1 (0x0000153e679dc000)
        libdl.so.2 => /lib64/libdl.so.2 (0x0000153e677d8000)
        libquadmath.so.0 => /usr/local/GCC/11.3.0/lib/../lib64/libquadmath.so.0 (0x0000153e69e7f000)