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34 Open 9 Closed
34 Open 9 Closed
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Issues list

t/SABlastPlus.t failures with makeblastdb from ncbi-blast+ 2.16.0
#62 opened Jul 30, 2024 by emollier
Where to acquire Helicobacter_pylori.mod needed by t/Genemark.hmm.prokaryotic.t ?
#60 opened Feb 16, 2020 by mr-c
Bug in Eponine test
#59 opened Mar 12, 2019 by dionys
BEDTools issues
#58 opened Feb 8, 2019 by cjfields
Build.PL mentions Bio::Run that does not exist
#57 opened Feb 5, 2019 by carandraug
2
Issue with Bowtie in test suite
#55 opened Jan 26, 2018 by tillea
1
bug in Bio::Tools::Run::Alignment::StandAloneFasta
#53 opened Sep 17, 2017 by cjfields
Test with latest bowtie is failing
#52 opened Sep 16, 2017 by tillea
SABlastPlus tests fail with latest version of BLAST+
#51 opened Sep 11, 2017 by cjfields
'cpgplot' input sequence not recognized
#47 opened Feb 24, 2017 by piatekmj
9
infernal does not contan cmscore since version 1.1
#45 opened Dec 16, 2016 by tillea 1.7.3
1
Index on cpanm?
#41 opened Oct 7, 2016 by keiranmraine
1
DB can't be found
#37 opened Jun 20, 2016 by ksteczk
1
problem in Installing Bio::Seq, Bio::DB::GFF,
#36 opened Feb 7, 2016 by amoltej
6
Bio::Tools::Run::StandAloneBlastPlus --remote database with '/' separator Priority: Normal Status: New Tracker: Bug
#34 opened Oct 8, 2015 by cjfields
1
Bio::Tools::Run::Phylo::Phyml, tree_string Priority: Normal Status: New Tracker: Bug
#33 opened Oct 8, 2015 by cjfields
Undocumented need for Array::Compare. Priority: Normal Status: New Tracker: Bug
#32 opened Oct 8, 2015 by cjfields
2
Bio::Tools::Run::Phylo::Phyml Lacks LG model of AA sequence evolution Priority: Normal Status: New Tracker: Bug
#31 opened Oct 8, 2015 by cjfields
version() not implemented for Bio::Tools::Run::StandAloneBlastPlus Priority: Normal Status: New Tracker: Bug
#30 opened Oct 8, 2015 by cjfields
Bio::Tools::Run::StandAloneBlastPlus tests failing with latest BLAST+ Priority: Normal Status: In Progress Tracker: Bug
#29 opened Oct 8, 2015 by cjfields
3
Bio::Tools::Run::BWA failing tests Priority: Normal Status: New Tracker: Bug
#28 opened Oct 8, 2015 by cjfields
Bio::Tools::Run::Phylo::Phyml -- documented values for -f parameter Priority: Low Status: New Tracker: Bug
#27 opened Oct 8, 2015 by cjfields
Bio::Tools::Run::Phylo::Phyml -- Bootstrap and other confidence measures Priority: Normal Status: New Tracker: Feature
#26 opened Oct 8, 2015 by cjfields
Bio::Tools::Run::StandAloneBlastPlus "entrez_query" option Priority: Normal Status: New Tracker: Bug
#25 opened Oct 8, 2015 by cjfields
3
bioperl-run LVB.pm and LVB.t require updates for LVB version 2.3 Priority: Normal Status: New Tracker: Bug
#24 opened Oct 8, 2015 by cjfields
2
ProTip! Find all open issues with in progress development work with linked:pr.