Releases: biopragmatics/biomappings
Releases · biopragmatics/biomappings
v0.3.7
What's Changed
- Enforce using CURIEs for all relationships by @cthoyt in #123
- Ensure SSSOM file is valid by @cthoyt in #155
- Use preferred prefixes in SSSOM by @cthoyt in #157
- Add broad/narrow curation to interface by @cthoyt in #158
- Add custom predictions and custom deployment tutorials by @cthoyt in #160
- Add VO-DrugBank predictions and curations by @cthoyt in #159
Full Changelog: v0.3.6...v0.3.7
Contributors
cthoyt
Assets 2
v0.3.6
What's Changed
- Add summary page button by @cthoyt in #145
- Improve trackability of committer by @cthoyt in #148
- Update testing with py38 by @cthoyt in #150
- Add generic contribution workflow to OBO flat files by @cthoyt in #149
- CVX and MeSH mappings by @cthoyt in #147
- Curated 1 mapping (sumir) by @sumirp in #151
New Contributors
Full Changelog: v0.3.5...v0.3.6
Contributors
cthoyt and sumirp
Assets 2
v0.3.5
v0.3.4
v0.3.3
v0.3.2
What's Changed
- Add UBERON-BTO predictions by @bgyori in #129
- Add custom predictions flag in web app runner by @cthoyt in #130
- Fix gilda prediction workflow by @cthoyt in #131
- Add more curations by @cthoyt in #132
- Add CLO processing notebook by @cthoyt in #133
- Update state handling by @cthoyt in #134
- Additional cell, cell line, and tissue curations by @cthoyt in #135
- Generate MAxO-MeSH predictions by @cthoyt in #137
- Add negative mappings to SSSOM output by @cthoyt in #138
- Enable custom curation files by @cthoyt in #140
Full Changelog: v0.3.1...v0.3.2
Contributors
cthoyt and bgyori
Assets 2
v0.3.1
v0.3.0 - Publication revision
This release corresponds to the changes that go with the re-submission of the biomappings paper.
What's Changed
- Assess curation precision by @cthoyt in #113
- Add sort by confidence to web app by @cthoyt in #75
- Add epidemiology curation by @cthoyt in #115
- Cleanup and update by @cthoyt in #116
- Improve prediction linting by @cthoyt in #118
- Propagate metadata from predictions into curated files by @cthoyt in #117
Full Changelog: v0.2.0...v0.3.0
Contributors
cthoyt
Assets 2
v0.2.0
This release prepares for the Biomappings paper submission (probably that no more curations are necessary before next release).
What's Changed
- Add predictions and curations for MeSH-ChEBI equivalences by @bgyori in #70
- Predict DOID mappings to UMLS, MeSH, and EFO by @cthoyt in #68
- Add more specific script URL for predictions by @bgyori in #76
- Assorted DOID and ChEBI curations by @cthoyt in #74
- Add manually curated PubChem-MeSH mappings by @bgyori in #77
- Remove DOID mappings where primary mappings exist by @bgyori in #79
- Remove more redundant predictions and curate some DOID mappings by @bgyori in #80
- More manual DOID-MeSH curation by @bgyori in #81
- Add UBERON-MeSH mappings by @bgyori in #86
- Generate and curate a new set of MESH-CHEBI mappings by @bgyori in #89
- Predict and curate CL-MESH mappings by @bgyori in #91
- Miscellaneous curation by @bgyori in #92
- More curations by @bgyori in #93
- Curate MONDO-MeSH mappings by @bgyori in #95
- Add AGRO-AGROVOC mappings by @cthoyt in #83
- Curate AGRO-AGROVOC-Mappings by @cthoyt in #97
- Add predicted WikiPathways orthologs by @cthoyt in #59
- Additional curation and updates for bioregistry by @cthoyt in #98
- Improve interface by @cthoyt in #99
- Update MONDO local unique identifiers by @cthoyt in #105
- Curate additional DOID-MESH mappings and contribute to DOID by @bgyori in #104
- Some MeSH curations by @bgyori in #107
- Add hetionet duplication and value added notebooks by @cthoyt in #102
- Add project governance documentation by @cthoyt in #106
- Fill out project skeleton by @cthoyt in #108
Full Changelog: v0.1.2...v0.2.0
Contributors
cthoyt and bgyori
