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citations.bib
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@article{Schaefer1954,
author = {Schaefer, Milner B.},
doi = {10.1007/BF02464432},
issn = {0092-8240},
journal = {Bulletin of the Inter-American Tropical Tuna Commission},
month = {mar},
number = {2},
pages = {27--56},
title = {{Some aspects of the dynamics of populations important to the management of the commercial marine fisheries}},
volume = {1},
year = {1954}
}
@article{Gordon1954,
author = {Gordon, H. Scott and Press, Chicago},
doi = {10.1086/257497},
issn = {0022-3808},
journal = {Journal of Political Economy},
month = {apr},
number = {2},
pages = {124--142},
title = {{The Economic Theory of a Common-Property Resource: The Fishery}},
volume = {62},
year = {1954}
}
@article{Petchy2015,
author = {Petchey, Owen L. and Pontarp, Mikael and Massie, Thomas M. and Kéfi, Sonia and Ozgul, Arpat and Weilenmann, Maja and Palamara, Gian Marco and Altermatt, Florian and Matthews, Blake and Levine, Jonathan M. and Childs, Dylan Z. and McGill, Brian J. and Schaepman, Michael E. and Schmid, Bernhard and Spaak, Piet and Beckerman, Andrew P. and Pennekamp, Frank and Pearse, Ian S.},
title = {The ecological forecast horizon, and examples of its uses and determinants},
journal = {Ecology Letters},
volume = {18},
number = {7},
issn = {1461-0248},
url = {http://dx.doi.org/10.1111/ele.12443},
doi = {10.1111/ele.12443},
pages = {597--611},
keywords = {Dynamics, ecosystems, environmental change, forecasting, futures, prediction, scenarios},
year = {2015},
}
@article{Ellison2004,
author = {Ellison, Aaron M.},
doi = {10.1111/j.1461-0248.2004.00603.x},
issn = {1461023X},
journal = {Ecology Letters},
number = {6},
pages = {509--520},
pmid = {87324813},
title = {{Bayesian inference in ecology}},
volume = {7},
year = {2004}
}
@article{Kriebel2001,
archivePrefix = {arXiv},
arxivId = {arXiv:1408.1149},
author = {Kriebel, D and Tickner, J and Epstein, P and Lemons, J and Levins, R and Loechler, E L and Quinn, M and Rudel, R and Schettler, T and Stoto, M},
doi = {10.2307/3454986},
eprint = {arXiv:1408.1149},
isbn = {0091-6765},
issn = {0091-6765},
journal = {Environmental health perspectives},
number = {9},
pages = {871--6},
pmid = {11673114},
title = {{The precautionary principle in environmental science.}},
volume = {109},
year = {2001}
}
@article{Clark1973,
author = { Colin W. Clark },
title = {Profit Maximization and the Extinction of Animal Species},
journal = {Journal of Political Economy},
volume = {81},
number = {4},
pages = {950-961},
year = {1973},
doi = {10.1086/260090},
}
@article{Halpern2013,
author = {Halpern, Benjamin S and Klein, Carissa J and Brown, Christopher J and Beger, Maria and Grantham, Hedley S and Mangubhai, Sangeeta and Ruckelshaus, Mary and Tulloch, Vivitskaia J and Watts, Matt and White, Crow and Possingham, Hugh P},
doi = {10.1073/pnas.1217689110},
issn = {1091-6490},
journal = {Proceedings of the National Academy of Sciences},
month = {apr},
number = {15},
pages = {6229--34},
title = {{Achieving the triple bottom line in the face of inherent trade-offs among social equity, economic return, and conservation.}},
volume = {110},
year = {2013}
}
@article{Costello2012,
author = {Costello, Christopher and Ovando, Daniel and Hilborn, Ray and Gaines, Steven D and Deschenes, Olivier and Lester, Sarah E},
doi = {10.1126/science.1223389},
journal = {Science (New York, N.Y.)},
month = {oct},
number = {6106},
pages = {517--20},
pmid = {23019613},
title = {{Status and solutions for the world's unassessed fisheries.}},
volume = {338},
year = {2012}
}
@article{Botsford1997,
author = {Botsford, Louis W and Castilla, J C and Peterson, Ch},
file = {:Users/cboettig/Library/Application Support/Mendeley Desktop/Downloaded/Botsford, Castilla, Peterson - 1997 - The management of fisheries and marine ecosystems.pdf:pdf},
isbn = {9437101043},
journal = {Science},
keywords = {BIOSCIENCE 1999},
mendeley-groups = {Theoretical Ecology},
number = {July},
pages = {509--515},
title = {{The management of fisheries and marine ecosystems}},
volume = {277},
year = {1997}
}
@article{Worm2006,
author = {Worm, Boris and Barbier, Edward B and Beaumont, Nicola and Duffy, J Emmett and Folke, Carl and Halpern, Benjamin S and Jackson, Jeremy B C and Lotze, Heike K and Micheli, Fiorenza and Palumbi, Stephen R and Sala, Enric and Selkoe, Kimberley a and Stachowicz, John J and Watson, Reg},
doi = {10.1126/science.1132294},
journal = {Science (New York, N.Y.)},
month = {nov},
number = {5800},
pages = {787--90},
pmid = {17082450},
title = {{Impacts of biodiversity loss on ocean ecosystem services.}},
url = {doi.org/10.1126/science.1132294},
volume = {314},
year = {2006}
}
@article{Worm2009,
author = {Worm, Boris and Hilborn, Ray and Baum, Julia K and Branch, Trevor A and Collie, Jeremy S and Costello, Christopher and Fogarty, Michael J and Fulton, Elizabeth a and Hutchings, Jeffrey a and Jennings, Simon and Jensen, Olaf P and Lotze, Heike K and Mace, Pamela M and McClanahan, Tim R and Minto, C{\'{o}}il{\'{i}}n and Palumbi, Stephen R and Parma, Ana M and Ricard, Daniel and Rosenberg, Andrew a and Watson, Reg and Zeller, Dirk},
doi = {10.1126/science.1173146},
journal = {Science (New York, N.Y.)},
month = {jul},
number = {5940},
pages = {578--85},
pmid = {19644114},
title = {{Rebuilding global fisheries.}},
url = {http://www.ncbi.nlm.nih.gov/pubmed/19644114},
volume = {325},
year = {2009}
}
@article{Branch2011,
author = {Branch, Trevor A and Jensen, Olaf P and Ricard, Daniel and Ye, Yimin and Hilborn, Ray},
doi = {10.1111/j.1523-1739.2011.01687.x},
journal = {Conservation biology : the journal of the Society for Conservation Biology},
month = {aug},
number = {4},
pages = {777--786},
pmid = {21535149},
title = {{Contrasting Global Trends in Marine Fishery Status Obtained from Catches and from Stock Assessments.}},
url = {http://www.ncbi.nlm.nih.gov/pubmed/21535149},
volume = {25},
year = {2011}
}
@article{Worm2012,
author = {Worm, Boris and Branch, Trevor A},
doi = {10.1016/j.tree.2012.07.005},
file = {:Users/cboettig/Library/Application Support/Mendeley Desktop/Downloaded/Worm, Branch - 2012 - The future of fish.pdf:pdf},
issn = {01695347},
journal = {Trends in Ecology {\&} Evolution},
mendeley-groups = {Theoretical Ecology},
month = {aug},
pages = {1--6},
publisher = {Elsevier Ltd},
title = {{The future of fish}},
url = {http://linkinghub.elsevier.com/retrieve/pii/S0169534712001668},
year = {2012}
}
@article{Polasky2011,
author = {Polasky, Stephen and Carpenter, Stephen R. and Folke, Carl and Keeler, Bonnie},
doi = {10.1016/j.tree.2011.04.007},
issn = {01695347},
journal = {Trends in Ecology {\&} Evolution},
month = {aug},
number = {8},
pages = {398--404},
pmid = {21616553},
publisher = {Elsevier Ltd},
title = {{Decision-making under great uncertainty: environmental management in an era of global change}},
volume = {26},
year = {2011}
}
@article{Fischer2009,
author = {Fischer, Joern and Peterson, Garry D and Gardner, Toby a and Gordon, Line J and Fazey, Ioan and Elmqvist, Thomas and Felton, Adam and Folke, Carl and Dovers, Stephen},
doi = {10.1016/j.tree.2009.03.020},
journal = {Trends in ecology {\&} evolution},
month = {oct},
number = {10},
pages = {549--54},
pmid = {19665820},
title = {{Integrating resilience thinking and optimisation for conservation.}},
url = {http://www.ncbi.nlm.nih.gov/pubmed/19665820},
volume = {24},
year = {2009}
}
@article{Hilborn2017,
author = {Hilborn, Ray},
doi = {10.1073/pnas.1715680114},
file = {:Users/cboettig/Documents/Mendeley-Watched/PNAS-2017-Hilborn-1715680114.pdf:pdf},
issn = {0027-8424},
journal = {Proceedings of the National Academy of Sciences},
number = {1},
pages = {201715680},
title = {{Traditional fisheries management is the best way to manage weak stocks}},
url = {http://www.pnas.org/lookup/doi/10.1073/pnas.1715680114},
year = {2017}
}
@article{RAM,
author = {Ricard, D. and Minto, C. and Jensen, O.P. and Baum, J.K.},
journal = {Fish and Fisheries},
pages = {380--398},
title = {{Examining the knowledge base and status of commercially exploited marine species with the RAM Legacy Stock Assessment Database}},
volume = {13},
year = {2011}
}
@article{Arnason2012,
author = {Arnason, Ragnar},
doi = {10.1093/reep/res011},
file = {:Users/cboettig/Documents/Mendeley-Watched/ITQ-paper.pdf:pdf},
isbn = {1750-6816$\backslash$r1750-6824},
issn = {17506816},
journal = {Review of Environmental Economics and Policy},
mendeley-groups = {Theoretical Ecology},
number = {2},
pages = {217--236},
title = {{Property rights in fisheries: How much can individual transferable quotas accomplish?}},
volume = {6},
year = {2012}
}
@book{Barber2012,
address = {Cambrdige},
author = {Barber, David},
publisher = {Cambridge University Press},
title = {{Bayesian Reasoning and Machine Learning}},
year = {2012}
}
@incollection{Bertsekas1996,
author = {Bertsekas, D.P.},
publisher = {Athena Scientific},
title = {{Dynamic Programming and Optimal Control}},
year = {1996}
}
@book{Beverton1957,
address = {London},
author = {Beverton, R.J.H. and Holt, S.J.},
publisher = {Chapman and Hall},
title = {{On the Dynamics of Exploited Fish Populations}},
year = {1957}
}
@article{Kaelbling1998,
author = {Kaelbling, Leslie P. and Littman, Michael L. and Cassandra, Anthony R.},
doi = {10.1016/S0004-3702(98)00023-X},
journal = {Artificial Intelligence},
number = {1-2},
pages = {99--134},
title = {{Planning and Acting in Partially Observable Stochastic Domains}},
volume = {101},
year = {1998}
}
@article{Kurniawati2008,
author = {Kurniawati, Hanna and Hsu, David and Lee, Wee Sun},
isbn = {9780262513098},
issn = {2330765X},
journal = {Proceedings of Robotics: Science and Systems IV},
title = {{SARSOP : Efficient Point-Based POMDP Planning by Approximating Optimally Reachable Belief Spaces}},
year = {2008}
}
@article{Lovejoy2016,
author = {Lovejoy, William S},
number = {1},
pages = {162--175},
title = {{Computationally Feasible Bounds for Partially Observed Markov Decision}},
volume = {39},
year = {1991}
}
@article{Pineau2003,
author = {Pineau, Joelle and Gordon, Geoff and Thrun, Sebastian},
isbn = {1045-0823},
issn = {10450823},
journal = {IJCAI International Joint Conference on Artificial Intelligence},
pages = {1025--1030},
title = {{Point-based value iteration: An anytime algorithm for POMDPs}},
year = {2003}
}
@article{Smallwood1973,
author = {Smallwood, Richard D. and Sondik, Edward J.},
journal = {Operations Research},
number = {5},
pages = {1071--1088},
title = {{The Optimal Control of Partially Observable Markov Processes Over a Finite Horizon}},
url = {https://www.jstor.org/stable/168926},
volume = {21},
year = {1973}
}
@article{Sondik1978,
author = {Sondik, E. J.},
journal = {Operations Research},
number = {2},
pages = {282--304},
title = {{The Optimal Control of Partially Observable Markov Processes Over the Infinite Horizon : Discounted Costs}},
volume = {26},
year = {1978}
}
@incollection{Sutton1998,
address = {Cambridge, Massachusetts},
author = {Sutton, R.S. and Barto, A.G.},
publisher = {The MIT Press},
title = {{Reinforcement Learning: an Introduction}},
year = {1998}
}
@article{Zhou2001,
author = {Zhou, Rong and Hansen, Eric A.},
issn = {10450823},
journal = {IJCAI International Joint Conference on Artificial Intelligence},
pages = {707--714},
title = {{An improved grid-based approximation algorithm for POMDPs}},
volume = {2},
year = {2001}
}
@book{Clark2000,
address = {Oxford},
author = {Clark, Colin W and Mangel, Marc},
publisher = {Oxford University Press},
title = {{Dynamic state variable models in ecology}},
year = {2000}
}
@article{Ricker1954,
author = {Ricker, W. E.},
doi = {10.1139/f54-039},
issn = {0015-296X},
journal = {Journal of the Fisheries Research Board of Canada},
month = {may},
number = {5},
pages = {559--623},
title = {{Stock and Recruitment}},
url = {http://www.nrcresearchpress.com/doi/abs/10.1139/f54-039},
volume = {11},
year = {1954}
}
@book{Bellman1957,
address = {Princeton, NJ},
author = {Bellman, R.E.},
publisher = {Princeton University Press},
title = {{Dynamic Programming}},
year = {1957}
}
@article{Sethi2005,
author = {Sethi, Gautam and Costello, Christopher and Fisher, Anthony and Hanemann, Michael and Karp, Larry},
doi = {10.1016/j.jeem.2004.11.005},
isbn = {00950696},
issn = {00950696},
journal = {Journal of Environmental Economics and Management},
number = {2},
pages = {300--318},
title = {{Fishery management under multiple uncertainty}},
volume = {50},
year = {2005}
}
@article{Mangel1985,
author = {Mangel, Marc},
isbn = {0124687202},
pages = {255},
publisher = {Academic Press},
title = {{Decision and control in uncertain resource systems}},
url = {http://dl.acm.org/citation.cfm?id=537497},
year = {1985}
}
@book{Mangel1988,
address = {Princeton},
author = {Mangel, Marc and Clark, Colin W},
editor = {Krebs, John and Clutton-Brock, Tim},
isbn = {9780691085067},
publisher = {Princeton University Press},
title = {{Dynamic Modeling in Behavioral Ecology}},
year = {1988}
}
@article{Ralston2011,
author = {Ralston, Stephen and Punt, Andr{\'{e}} E. and Hamel, Owen and Devore, John D and Conser, J Ramon},
journal = {Fishery Bulletin},
mendeley-groups = {Theoretical Ecology/Decision Theory},
pages = {217--231},
title = {{A meta-analytic approach to quantifying scientific uncertainty in stock assessments}},
year = {2011}
}
@article{Memarzadeh2018,
author = {Memarzadeh, Milad and Boettiger, Carl},
doi = {10.1016/j.biocon.2018.05.009},
issn = {00063207},
journal = {Biological Conservation},
number = {May},
pages = {9--15},
publisher = {Elsevier},
title = {{Adaptive management of ecological systems under partial observability}},
volume = {224},
year = {2018}
}
@article{Shea1998,
author = {Shea, Katriona},
doi = {10.1016/S0169-5347(98)01381-0},
file = {:Users/cboettig/Documents/Mendeley-Watched/1-s2.0-S0169534798013810-main.pdf:pdf},
isbn = {0169-5347},
issn = {01695347},
journal = {Trends in Ecology and Evolution},
number = {9},
pages = {371--375},
pmid = {21238346},
title = {{Management of populations in conservation, harvesting and control}},
volume = {13},
year = {1998}
}
@article{Weitzman2002,
author = {Weitzman, Martin L},
doi = {10.1006/jeem.2000.1181},
issn = {00950696},
journal = {Journal of Environmental Economics and Management},
month = {mar},
number = {2},
pages = {325--338},
title = {{Landing Fees vs Harvest Quotas with Uncertain Fish Stocks}},
url = {http://linkinghub.elsevier.com/retrieve/pii/S0095069600911811},
volume = {43},
year = {2002}
}
@article{Dorner2009,
author = {Dorner, Brigitte and Peterman, Randall M. and Su, Zhenming},
doi = {10.1139/F09-144},
journal = {Canadian Journal of Fisheries and Aquatic Sciences},
number = {12},
pages = {2199--2221},
title = {{Evaluation of performance of alternative management models of Pacific salmon (Oncorhynchus spp.) in the presence of climatic change and outcome uncertainty using Monte Carlo simulations}},
volume = {66},
year = {2009}
}
@article{Clark1986,
author = {Clark, Colin W and Kirkwood, Geoffrey P.},
doi = {10.1016/0095-0696(86)90024-0},
issn = {00950696},
journal = {Journal of Environmental Economics and Management},
mendeley-groups = {Theoretical Ecology/PDG Control},
month = {sep},
number = {3},
pages = {235--244},
title = {{On uncertain renewable resource stocks: Optimal harvest policies and the value of stock surveys}},
url = {http://linkinghub.elsevier.com/retrieve/pii/0095069686900240},
volume = {13},
year = {1986}
}
@article{Chades2011,
author = {Chad{\`{e}}s, Iadine and Martin, Tara G and Nicol, Samuel and Burgman, Mark A. and Possingham, Hugh P and Buckley, Yvonne M},
doi = {10.1073/pnas.1016846108},
issn = {1091-6490},
journal = {Proceedings of the National Academy of Sciences},
month = {may},
number = {20},
pages = {8323--8},
pmid = {21536884},
title = {{General rules for managing and surveying networks of pests, diseases, and endangered species.}},
volume = {108},
year = {2011}
}
@article{Chades2008,
author = {Chad{\`{e}}s, Iadine and McDonald-Madden, Eve and McCarthy, Michael a and Wintle, Brendan and Linkie, Matthew and Possingham, Hugh P},
doi = {10.1073/pnas.0805265105},
issn = {1091-6490},
journal = {Proceedings of the National Academy of Sciences},
month = {sep},
number = {37},
pages = {13936--40},
pmid = {18779594},
title = {{When to stop managing or surveying cryptic threatened species.}},
volume = {105},
year = {2008}
}
@article{Marescot2013,
author = {Marescot, Lucile and Chapron, Guillaume and Chad{\`{e}}s, Iadine and Fackler, Paul L. and Duchamp, Christophe and Marboutin, Eric and Gimenez, Olivier},
doi = {10.1111/2041-210X.12082},
journal = {Methods in Ecology and Evolution},
number = {9},
pages = {872--884},
title = {{Complex decisions made simple: a primer on stochastic dynamic programming}},
url = {http://doi.wiley.com/10.1111/2041-210X.12082},
volume = {4},
year = {2013}
}
@article{Reed1979,
author = {Reed, William J},
doi = {10.1016/0095-0696(79)90014-7},
issn = {00950696},
journal = {Journal of Environmental Economics and Management},
month = {dec},
number = {4},
pages = {350--363},
publisher = {Elsevier},
title = {{Optimal escapement levels in stochastic and deterministic harvesting models}},
volume = {6},
year = {1979}
}
@article{Springborn2013,
author = {Springborn, Michael and Sanchirico, James N},
doi = {10.1016/j.jeem.2013.07.003},
issn = {00950696},
journal = {Journal of Environmental Economics and Management},
month = {nov},
number = {3},
pages = {609--624},
publisher = {Elsevier},
title = {{A density projection approach for non-trivial information dynamics: Adaptive management of stochastic natural resources}},
volume = {66},
year = {2013}
}
@article{Williams2011,
author = {Williams, Byron K.},
doi = {10.1016/j.ecolmodel.2010.12.015},
isbn = {03043800},
issn = {03043800},
journal = {Ecological Modelling},
keywords = {Markov decision process,Natural resources,Partial observability,Structural uncertainty,Value iteration},
mendeley-groups = {Theoretical Ecology/Management},
number = {5},
pages = {1092--1102},
publisher = {Elsevier B.V.},
title = {{Resolving structural uncertainty in natural resources management using POMDP approaches}},
volume = {222},
year = {2011}
}
@article{Schaefer1957,
author = {Schaefer, Milner B.},
doi = {10.1139/f57-025},
issn = {0015-296X},
journal = {Journal of the Fisheries Research Board of Canada},
month = {may},
number = {5},
pages = {669--681},
title = {{Some Considerations of Population Dynamics and Economics in Relation to the Management of the Commercial Marine Fisheries}},
volume = {14},
year = {1957}
}
@article{Haight2010,
author = {Haight, Robert G. and Polasky, Stephen},
doi = {10.1016/j.reseneeco.2010.04.005},
issn = {09287655},
journal = {Resource and Energy Economics},
keywords = {Dynamic programming,Invasive species,Monitoring,Optimal management,Partially observable Markov decision process},
number = {4},
pages = {519--533},
publisher = {Elsevier B.V.},
title = {{Optimal control of an invasive species with imperfect information about the level of infestation}},
volume = {32},
year = {2010}
}
@article{Costello2016,
author = {Costello, Christopher and Ovando, Daniel and Clavelle, Tyler and Strauss, C. Kent and Hilborn, Ray and Melnychuk, Michael C. and Branch, Trevor A and Gaines, Steven D and Szuwalski, Cody S. and Cabral, Reniel B. and Rader, Douglas N. and Leland, Amanda},
doi = {10.1073/pnas.1520420113},
issn = {0027-8424},
journal = {Proceedings of the National Academy of Sciences},
month = {may},
number = {18},
pages = {5125--5129},
title = {{Global fishery prospects under contrasting management regimes}},
volume = {113},
year = {2016}
}
@article{Roughgarden1996,
author = {Roughgarden, Joan E and Smith, F.},
issn = {0132-8867},
journal = {Proceedings of the National Academy of Sciences},
number = {10},
pages = {5078--5083},
publisher = {National Academy of Sciences},
title = {{Why fisheries collapse and what to do about it}},
url = {http://www.pnas.org/content/93/10/5078.short},
volume = {93},
year = {1996}
}
@inproceedings{Jetstream,
address = {New York, New York, USA},
author = {Stewart, Craig A and Turner, George and Vaughn, Matthew and Gaffney, Niall I. and Cockerill, Timothy M and Foster, Ian and Hancock, David and Merchant, Nirav and Skidmore, Edwin and Stanzione, Daniel and Taylor, James and Tuecke, Steven},
booktitle = {Proceedings of the 2015 XSEDE Conference on Scientific Advancements Enabled by Enhanced Cyberinfrastructure - XSEDE '15},
doi = {10.1145/2792745.2792774},
isbn = {9781450337205},
pages = {1--8},
publisher = {ACM Press},
title = {{Jetstream: A self-provisioned, scalable science and engineering cloud environment}},
year = {2015}
}
@article{Fackler2014,
author = {Fackler, P. and Pacifici, K.},
journal = {Environmental Management},
pages = {27--36},
title = {{Addressing structural and observational uncertainty in resource management}},
volume = {133},
year = {2014}
}
@article{Fackler2014b,
author = {Fackler, P. and Haight, R.G.},
journal = {Resource and Energy Economics},
pages = {226--241},
title = {{Monitoring as a partially observable decision problem}},
volume = {37},
year = {2014}
}
@article{Baggio2016,
author = {Baggio, M. and Fackler, P.L.},
journal = {Economic Behavior and Organization},
title = {{Optimal management with reversible regime shifts}},
doi = {10.1016/j.jebo.2016.04.016},
year = {2016}
}
@article{Ong2010,
author = {Ong, S.C.W. and Png, S.W. and Hsu, D. and Lee, W.S.},
journal = {The International Journal of Robotics Research},
pages = {1053--1068},
title = {{Planning under uncertainty for robotic tasks with mixed observability}},
volume = {29},
number = {8},
year = {2010}
}
@article{Chades2012,
author = {Chades, I. and Sabbadin, R. and Carwardine, J. and Martin, T.G. and Nicol, S. and Buffet, O.},
journal = {In Proc. of 26th AAAI},
pages = {267--273},
title = {{MOMDPs: a solution for modeling adaptive management problems}},
address = {Toronto, Canada},
year = {2012}
}
@article{Memarzadeh2016,
author = {Memarzadeh, M. and Pozzi, M.},
journal = {Reliability Engineering and System Safety},
pages = {137--151},
title = {{Value of information in sequential decision making: Component inspection, permanent
monitoring and system-level scheduling}},
volume = {154},
year = {2016}
}
@article{Ricard2011,
author = {Ricard, D. and Minto, C. and Jensen, O.P. and Baum, J.K.},
journal = {Fish and Fisheries},
pages = {380--398},
title = {{Examining the knowledge base and status of commercially exploited marine species with the RAM Legacy Stock Assessment Database}},
volume = {13},
year = {2011}
}
@article{Dichmont2016,
title = "A review of stock assessment packages in the United States",
journal = "Fisheries Research",
volume = "183",
number = "Supplement C",
pages = "447 - 460",
year = "2016",
issn = "0165-7836",
doi = "10.1016/j.fishres.2016.07.001",
author = "Catherine M. Dichmont and Roy A. Deng and Andre E. Punt and Jon Brodziak and Yi-Jay Chang and Jason M. Cope and James N. Ianelli and Christopher M. Legault and Richard D. Methot and Clay E. Porch and Michael H. Prager and Kyle W. Shertzer",
keywords = "Fishing mortality, Reference points, Stock assessment, Population dynamics"
}
@article{pomp,
archivePrefix = {arXiv},
arxivId = {1509.00503},
author = {King, Aaron A. and Nguyen, Dao and Ionides, Edward L.},
doi = {10.18637/jss.v069.i12},
eprint = {1509.00503},
journal = {Journal of Statistical Software},
number = {12},
pmid = {18291371},
title = {{Statistical Inference for Partially Observed Markov Processes via the R Package pomp}},
volume = {69},
year = {2015}
}
@article{admb,
author = {Fournier, David A. and Skaug, Hans J. and Ancheta, Johnoel and Ianelli, James and Magnusson, Arni and Maunder, Mark N. and Nielsen, Anders and Sibert, John},
doi = {10.1080/10556788.2011.597854},
journal = {Optimization Methods and Software},
number = {2},
pages = {233--249},
title = {{AD Model Builder: Using automatic differentiation for statistical inference of highly parameterized complex nonlinear models}},
volume = {27},
year = {2012}
}
@Manual{sarsop-pkg,
title = {{sarsop: Approximate POMDP Planning Software in R, v0.5.0, <https://github.com/boettiger-lab/sarsop>}},
author = {Carl Boettiger and Jeroen Ooms and Milad Memarzadeh},
note = {R package version 0.5.0},
url = {https://github.com/boettiger-lab/sarsop},
doi = {10.5281/zenodo.1162856},
year = {2018}
}
@article{nimble,
author = {{de Valpine}, Perry and Turek, Daniel and Paciorek, Christopher J. and Anderson-Bergman, Clifford and Duncan, {Temple Lang} and Bodik, Rastislav},
doi = {10.1080/10618600.2016.1172487},
eprint = {arXiv:1505.05093v1},
isbn = {1061-8600},
issn = {15372715},
journal = {Journal of Computational and Graphical Statistics},
keywords = {Domain-specific language,Hierarchical models,MCEM,MCMC,Probabilistic programming,R},
mendeley-groups = {Math Methods and Model Inference},
number = {2},
pages = {403--413},
publisher = {Taylor {\&} Francis},
title = {{Programming With Models: Writing Statistical Algorithms for General Model Structures With NIMBLE}},
url = {https://doi.org/10.1080/10618600.2016.1172487},
volume = {26},
year = {2017}
}
@article{Ludwig1981,
author = {Ludwig, D. and Walters, C.J.},
journal = {Journal of Canadian Fisheries and Aquatic Sciences},
pages = {711--720},
title = {{Measurement errors and uncertainty in parameter estimates for
stock and recruitment}},
volume = {38},
number = {6},
year = {1981}
}
@article{Moxnes2003,
author = {Moxnes, E.},
journal = {Journal of Environmental Economics and Management},
pages = {85--108},
title = {{Uncertain measurements of renewable resources: approximations, harvesting policies and value of accuracy}},
volume = {45},
issue = {1},
year = {2003}
}
@article{Engen1997,
author = {Engen, S. and Lande, R. and Sæther, B.},
journal = {Journal of Theoretical Biology},
pages = {201--212},
title = {{Harvesting strategies for fluctuating populations based on uncertain population estimates}},
volume = {186},
issue = {2},
year = {1997}
}
@book{Clark1990,
author = {Clark, Colin W},
isbn = {0471508837},
pages = {400},
publisher = {Wiley-Interscience},
title = {{Mathematical Bioeconomics: The Optimal Management of Renewable Resources, 2nd Edition}},
year = {1990}
}
@article{Larkin1977,
author = {Larkin, P a},
doi = {10.1577/1548-8659(1977)106<1:AEFTCO>2.0.CO;2},
issn = {0002-8487},
journal = {Transactions of the American Fisheries Society},
month = {jan},
number = {1},
pages = {1--11},
title = {{An Epitaph for the Concept of Maximum Sustained Yield}},
volume = {106},
year = {1977}
}
@book{FAO2009,
author = {{World Bank and FAO}},
booktitle = {The Sunken Billions},
doi = {10.1596/978-0-8213-7790-1},
isbn = {978-0-8213-7790-1},
issn = {0821377906},
pages = {100},
title = {{The Sunken Billions. The Economic Justification for Fisheries Reform}},
year = {2009}
}
@article{Mace2001,
author = {Mace, P M},
doi = {10.1046/j.1467-2979.2001.00033.x},
isbn = {1467-2960},
issn = {1467-2960},
journal = {Fish and Fisheries},
pages = {2--32},
title = {{A new role for MSY in single-species and ecosystem approaches to fisheries stock assessment and management}},
volume = {2},
year = {2001}
}
@book{Hilborn1992,
address = {Boston, MA},
author = {Hilborn, Ray and Walters, Carl J},
doi = {10.1007/978-1-4615-3598-0},
isbn = {978-1-4020-1845-9},
mendeley-groups = {Theoretical Ecology},
publisher = {Springer US},
title = {{Quantitative Fisheries Stock Assessment}},
year = {1992}
}
@techreport{UNCLOS1982,
author = {UNCLOS},
institution = {1833 UNTS 3.},
title = {{United Nations Convention on the Law of the Sea.}},
year = {1982}
}
@article{Holden2015,
author = {Holden, M.H. and Conrad, J.M.},
journal = {Mathematical biosciences},
pages = {76--85},
title = {{Optimal escapement in stage-structured fisheries with environmental stochasticity}},
volume = {269},
year = {2015}
}
@article{Johnson2016,
author = {Johnson, F.A. and Fackler, P.L. and Boomer, G.S. and Zimmerman, G.S. and Williams, B.K. and Nichols, J.D. and Dorazio, R.M.},
journal = {PloS one},
pages = {e0157373},
title = {{State-Dependent Resource Harvesting with Lagged Information about System States}},
volume = {11},
issue = {6},
year = {2016}
}
@inbook{Johnson2015,
address = {Dordrecht},
author = {Johnson, Fred A and Williams, Byron K},
booktitle = {Adaptive Management of Social-Ecological Systems},
doi = {10.1007/978-94-017-9682-8_5},
editor = {Allen, Craig R and Garmestani, Ahjond S},
isbn = {978-94-017-9682-8},
pages = {61--84},
publisher = {Springer Netherlands},
title = {{A Decision-Analytic Approach to Adaptive Resource Management}},
year = {2015}
}
@article {Boettiger2016,
author = {Boettiger, Carl and Bode, Michael and Sanchirico, James N. and LaRiviere, Jacob and Hastings, Alan and Armsworth, Paul R.},
title = {Optimal management of a stochastically varying population when policy adjustment is costly},
journal = {Ecological Applications},
volume = {26},
number = {3},
issn = {1939-5582},
doi = {10.1890/15-0236},
pages = {808--817},
keywords = {adjustment costs, ecological management, fisheries, optimal control},
year = {2016},
}
@article{May1977,
author = {May, Robert M},
doi = {10.1038/269471a0},
issn = {0028-0836},
journal = {Nature},
month = {oct},
number = {5628},
pages = {471--477},
title = {{Thresholds and breakpoints in ecosystems with a multiplicity of stable states}},
volume = {269},
year = {1977}
}
@article{Holling1973,
author = {Holling, C. S.},
doi = {10.1146/annurev.es.04.110173.000245},
issn = {0066-4162},
journal = {Annual Review of Ecology and Systematics},
month = {nov},
number = {1},
pages = {1--23},
publisher = {JSTOR},
title = {{Resilience and Stability of Ecological Systems}},
volume = {4},
year = {1973}
}
@article{Walters1978,
author = {Walters, Carl J and Hilborn, Ray},
doi = {10.1146/annurev.es.09.110178.001105},
issn = {0066-4162},
journal = {Annual Review of Ecology and Systematics},
keywords = {parameter uncertainty},
month = {nov},
number = {1},
pages = {157--188},
title = {{Ecological Optimization and Adaptive Management}},
volume = {9},
year = {1978}
}
@article{Levin2008,
author = {Levin, Simon A and Lubchenco, Jane},
doi = {10.1641/B580107},
issn = {1525-3244},
journal = {BioScience},
month = {jan},
number = {1},
pages = {27--32},
title = {{Resilience, Robustness, and Marine Ecosystem-based Management}},
volume = {58},
year = {2008}
}
@article{Shani2013,
author = {Shani, G. and Pineau, J. and Roy, N.},
journal = {Auton Agents Multi-Agent Syst},
pages = {1--51},
title = {{A survey of point-based POMDP solvers}},
volume = {27},
issue = {1},
year = {2013}
}
@article{Lane1989,
author = {Lane, Daniel E},
doi = {10.1287/opre.37.2.240},
journal = {Operations Research},
number = {2},
pages = {240--254},
title = {{A Partially Observable Model of Decision Making by Fishermen}},
volume = {37},
year = {1989}
}
@article{Smith1994,
author = {Smith, A.D.M.},
journal = {Population dynamics for fisheries management},
pages = {249--253},
title = {{Management strategy evaluation – the light on the hill}},
publisher = {Australian Society for Fish Biology},
location = {Perth, Australia},
year = {1994}
}
@article{Smith1999,
author = {Smith, A.D.M. and Sainsbury, K.J. and Stevens, R.A.},
journal = {ICES Journal of Marine Science},