Code

5.1 release candidate#2720

Code

Merged

ZedThree merged 214 commits intomasterboutproject/BOUT-dev:masterfrom v5.1.0-rcboutproject/BOUT-dev:v5.1.0-rcCopy head branch name to clipboardOct 4, 2023

+1,864-1,189

Commits

Commits on Feb 28, 2022

• Build containers in GHA CI

  dschwoerer

  committed
  0732af0

• Ensure we found a parallel SUNDIALS

  dschwoerer

  committed
  2b11fca

• Workaround for finding SUNDIALS

  dschwoerer

  committed
  7d98f8e

• Switching tests to CMake

  dschwoerer

  committed
  1dbebcf

• add debug

  dschwoerer

  committed
  7f54be1

• Avoid adding netcdf to flags

  dschwoerer

  committed
  8277875

• Cleanup tests

  dschwoerer

  committed
  28999d7

Commits on Mar 1, 2022

• debug

  dschwoerer

  committed
  f53770d

• Fix static linking for petsc

  dschwoerer

  committed
  7b73f39

• Run only unit tests for coverage

  dschwoerer

  committed
  c480555

• Set sundials LD_LIBRARY_PATH

  dschwoerer

  committed
  6628bb5

• Fix coverage job

  dschwoerer

  committed
  f5cdabf

• CI: Install fastcov

  dschwoerer

  committed
  d3c5ffa

• try lcov for coverage

  dschwoerer

  committed
  995151d

Commits on Mar 4, 2022

• fix coverage for cmake

  Show description for 02bd701
  dschwoerer

  committed
  02bd701

• Merge branch 'next' of https://github.com/boutproject/BOUT-dev into HEAD

  dschwoerer

  committed
  f4d7607

Commits on Mar 5, 2022

• Tidy up messages

  Show description for 5864e7f
  

  dschwoerer

  and

  ZedThree

  authored
  5864e7f

Commits on Mar 9, 2022

• Improve docker CI

  Show description for d903927
  dschwoerer

  committed
  d903927

• Only generate if file is executable

  dschwoerer

  committed
  eb7f84a

• CI: Nicer name for builds

  dschwoerer

  committed
  9a330ab

Commits on Jul 28, 2022

• Merge branch 'next' into ci-cmake-only

  Show description for f96e84d
  ZedThree

  committed
  f96e84d

• Add deprecation warning to configure

  ZedThree

  committed
  2b43271

Commits on Oct 25, 2022

• Merge branch 'next' into ci-cmake-only

  dschwoerer

  committed
  aa23f56

Commits on Nov 4, 2022

• Merge remote-tracking branch 'origin/next' into ci-cmake-only

  dschwoerer

  committed
  bd73ab7

• make tarball after bumping version

  dschwoerer

  committed
  b73414e

• switch some docs to cmake

  dschwoerer

  committed
  a407a86

• Switch advanced install to cmake

  dschwoerer

  committed
  7765700

• Update recommendet PETSc

  dschwoerer

  committed
  48daf16

• Update installing to cmake

  dschwoerer

  committed
  98edf23

• 3D metrics user switched away from configure

  dschwoerer

  committed
  9d6de34

• make the cmake version more prominent

  dschwoerer

  committed
  6352653

• Some updates to the boutpp documentation

  dschwoerer

  committed
  17baa1c

• Update more flags to the cmake version

  dschwoerer

  committed
  a2fcb78

• Change some more options to cmake

  dschwoerer

  committed
  7b908b0

• Update scorep section to cmake

  dschwoerer

  committed
  eecf5ad

Commits on Nov 16, 2022

• Handle missing python better for finding numpy

  dschwoerer

  committed
  3f647a6

Commits on Jan 9, 2023

• Remove references to build dir from install

  dschwoerer

  committed
  6427a41

Commits on Jan 24, 2023

• Track more build options

  dschwoerer

  committed
  9832fa5

• Apply clang-format changes

  

  dschwoerer

  authored and

  github-actions[bot]

  committed
  6d3c611

Commits on Jan 26, 2023

• Rename use_cuda to has_cuda

  dschwoerer

  committed
  0f88b0b

Commits on Feb 2, 2023

• Handle strings separately

  dschwoerer

  committed
  9ce221e

• Apply black changes

  

  dschwoerer

  authored and

  github-actions[bot]

  committed
  7f35ad7

Commits on Feb 3, 2023

• set CMAKE_INSTALL_RPATH to installed lib dir

  Show description for efe5e3d
  dschwoerer

  committed
  efe5e3d

Commits on Feb 7, 2023

• switch to BOUT_FOR

  dschwoerer

  committed
  0046c19

• Compute modulo only once

  dschwoerer

  committed
  37528b7

• Always provide applyParallelBoundary

  Show description for 0aa5d94
  dschwoerer

  committed
  0aa5d94

• Fix BOUT_HAS_CUDA naming

  dschwoerer

  committed
  bc8bedb

• workaround: apply BC

  Show description for 428b035
  dschwoerer

  committed
  428b035

• Tidy: set variables as unused

  dschwoerer

  committed
  da3c335

• CI: Also build an image with utils installed

  dschwoerer

  committed
  b7dfa17

• Cache invSg results

  Show description for ef4c8c5
  dschwoerer

  committed
  ef4c8c5

• Use parallel slices for parallel ops

  dschwoerer

  committed
  5cf7abe

• Apply clang-format changes

  

  dschwoerer

  authored and

  github-actions[bot]

  committed
  bd8e707

Commits on Feb 8, 2023

• Fix getUniform warning

  Show description for 554cf70
  dschwoerer

  committed
  554cf70

• Cache 1/sqrt(g_22)

  dschwoerer

  committed
  fbb5530

• Set some _ROOT vars

  dschwoerer

  committed
  a620781

• Apply clang-format changes

  

  dschwoerer

  authored and

  github-actions[bot]

  committed
  06efe47

• fix boutconfig's has

  dschwoerer

  committed
  59966be

• Cleanup LocalNz usage

  dschwoerer

  committed
  dea7ec8

• [skip ci] Apply black changes

  

  dschwoerer

  authored and

  github-actions[bot]

  committed
  b415d37

• Apply clang-format changes

  

  dschwoerer

  authored and

  github-actions[bot]

  committed
  0697c3c

• Apply clang-format changes

  

  dschwoerer

  authored and

  github-actions[bot]

  committed
  e3ebd6e

• Fix it also for ./configure

  dschwoerer

  committed
  0bc67df

• Merge branch 'next' of https://github.com/boutproject/BOUT-dev into invSg

  dschwoerer

  committed
  deafbee

• Merge branch 'next' of https://github.com/boutproject/BOUT-dev into hermitespline

  dschwoerer

  committed
  eecf690

• Merge branch 'next' into getUniform-warning

  dschwoerer

  authored
  4fba166

Commits on Feb 17, 2023

• Merge pull request #2655 from boutproject/master

  Show description for 07cbc49
  bendudson

  authored
  07cbc49

Commits on Feb 20, 2023

• Merge remote-tracking branch 'origin/next' into build-opts

  dschwoerer

  committed
  546d664

• Merge remote-tracking branch 'origin/next' into fci-simplify

  dschwoerer

  committed
  2092e5e

• Merge remote-tracking branch 'origin/next' into getUniform-warning

  dschwoerer

  committed
  0e8b31c

• Merge branch 'getUniform-warning' of https://github.com/boutproject/BOUT-dev into getUniform-warning

  dschwoerer

  committed
  ac1c484

• apply clang-format v15.0.7 and .clang-format@d8f14fdd

  dschwoerer

  committed
  a47e617

• Merge branch 'next' of github.com:boutproject/BOUT-dev into cmake-root

  dschwoerer

  committed
  2dc855a

• Do not clang-format the confusing macro test

  dschwoerer

  committed
  ae76881

• Fix bad merge

  Show description for b12ebd4
  

  dschwoerer

  and

  github-actions[bot]

  authored
  b12ebd4

• Apply clang-format changes

  

  dschwoerer

  authored and

  github-actions[bot]

  committed
  9aa09ea

Commits on Feb 22, 2023

• Merge pull request #2640 from boutproject/fci-simplify

  Show description for 9a3787c
  ZedThree

  authored
  9a3787c

• Merge pull request #2644 from boutproject/getUniform-warning

  Show description for 92ac396
  ZedThree

  authored
  92ac396

• Merge pull request #2643 from boutproject/find-numpy

  Show description for 60da444
  ZedThree

  authored
  60da444

• Do not include deprecated legacy_netcdf

  dschwoerer

  committed
  2bea438

• Avoid macro by returning a struct

  Show description for 2fff7e8
  dschwoerer

  committed
  2fff7e8

• Add const again

  dschwoerer

  committed
  b8d920a

• Merge branch 'next' of https://github.com/boutproject/BOUT-dev into fv_ops_cleanup

  dschwoerer

  committed
  7056e3f

• Merge branch 'next' of github.com:boutproject/BOUT-dev into invSg

  dschwoerer

  committed
  917a02e

Commits on Feb 23, 2023

• Fix versions after release

  dschwoerer

  committed
  09b9377

• Do not use template class initialisation without parameter

  dschwoerer

  committed
  6719b4a

• Use helper function to avoid having to specify class

  dschwoerer

  committed
  cd60379

• Merge pull request #2641 from boutproject/fv_ops_cleanup

  Show description for c199c5a
  ZedThree

  authored
  c199c5a

• Merge pull request #2647 from boutproject/boutconfig-has-fix

  Show description for 29aeab6
  bendudson

  authored
  29aeab6

Commits on Mar 14, 2023

• Use force to set build flags

  Show description for c06cf15
  bendudson

  committed
  c06cf15

• Warn rather than error when restart missing variables

  Show description for 51a5cca
  bendudson

  committed
  51a5cca

• Merge pull request #2670 from boutproject/next-version

  Show description for c6fde95
  bendudson

  authored
  c6fde95

• Merge pull request #2645 from boutproject/hermitespline

  Show description for 1775bc1
  bendudson

  authored
  1775bc1

• Merge pull request #2652 from boutproject/cmake-root

  Show description for 27accce
  bendudson

  authored
  27accce

Commits on Mar 15, 2023

• Add dependabot config

  dschwoerer

  committed
  c1648ff

Commits on Mar 16, 2023

• Merge pull request #2680 from boutproject/dependabot

  Show description for 28a7377
  bendudson

  authored
  28a7377

Commits on Mar 21, 2023

• Merge pull request #2676 from boutproject/restarting-options

  Show description for 2e035bb
  bendudson

  authored
  2e035bb

Commits on Mar 22, 2023

• Merge pull request #2662 from boutproject/next-format

  Show description for 13e53f0
  ZedThree

  authored
  13e53f0

Commits on Mar 23, 2023

• Use force to set build flags

  Show description for e830959
  dschwoerer

  committed
  e830959

• Merge remote-tracking branch 'origin/next' into build-opts

  dschwoerer

  committed
  75593bb

• Add plt.show() to example

  Show description for 58bdf81
  dschwoerer

  authored
  58bdf81

• Merge pull request #2687 from boutproject/quickdocs-plt-show

  Show description for b03b078
  ZedThree

  authored
  b03b078

• Merge pull request #2634 from boutproject/build-opts

  Show description for 7bdc0ab
  ZedThree

  authored
  7bdc0ab

• Cleanup coordinates checking

  Show description for 77f67a6
  dschwoerer

  committed
  77f67a6

• Check all parallel slices

  dschwoerer

  committed
  b369aa7

• Only check parallel slices if they are different

  dschwoerer

  committed
  ea7201c

• Prefer const

  Show description for 71f1169
  

  dschwoerer

  and

  ZedThree

  committed
  71f1169

• Apply clang-format changes

  

  dschwoerer

  authored and

  github-actions[bot]

  committed
  36897d8

Commits on Mar 24, 2023

• Add comments to check functions

  dschwoerer

  authored
  de88021

Commits on Apr 15, 2023

• Single hyphen for DCHECK option.

  tomchapman

  committed
  5acab08

Commits on Apr 17, 2023

• Corrected cmake argument -DPETSC_ROOT to -DPETSC_DIR in PETSc section of 'Advanced installation options' page of manual.

  tomchapman

  committed
  5d2aeac

• Update examples to petsc version 3.19.0 in 'Advanced installation options' page of manual.

  tomchapman

  committed
  7d4de3d

• Add /manual/sphinx/_build to gitignore file.

  tomchapman

  committed
  ffcdd33

• Added comma, for clarity.

  tomchapman

  committed
  e89c2c4

• Clarify example using dnf.

  tomchapman

  committed
  f3dc73f

• Change command example from 'make' to 'cmake --build <build-directory>' in 'Compiling BOUT++' section of 'Advanced installation options' page of manual.

  tomchapman

  committed
  299c747

Commits on Apr 19, 2023

• CI: do not run on removed old ubuntu

  dschwoerer

  committed
  8c04c36

• CI: move some runs to ubunutu-latest

  dschwoerer

  committed
  7a8842d

• CI: Update paths for ubuntu 20.04

  dschwoerer

  committed
  87f7944

• Merge pull request #2650 from boutproject/coords-checking

  Show description for 7c5e51b
  ZedThree

  authored
  7c5e51b

Commits on Apr 20, 2023

• CI: fix slepc path

  Show description for a5a1f01
  

  dschwoerer

  and

  ZedThree

  committed
  a5a1f01

• CI: fix petsc path

  dschwoerer

  committed
  e7f95df

• CI: Drop coverage build OS down to ubuntu-20.04

  Show description for 9664ac1
  

  ZedThree

  authored and

  dschwoerer

  committed
  9664ac1

• Merge pull request #2696 from boutproject/ci-fix-next

  Show description for cd83558
  ZedThree

  authored
  cd83558

Commits on Apr 25, 2023

• Mark some functions as const

  dschwoerer

  committed
  dbbc209

• Pull out cached variables to function

  dschwoerer

  committed
  7095725

• Merge remote-tracking branch 'origin/next' into invSg

  dschwoerer

  committed
  6ce3772

• Apply clang-format changes

  

  dschwoerer

  authored and

  github-actions[bot]

  committed
  44d66df

Commits on Apr 26, 2023

• Merge branch 'next' of https://github.com/boutproject/BOUT-dev into HEAD

  dschwoerer

  committed
  f1b882a

• Merge pull request #2646 from boutproject/invSg

  Show description for dcda5d6
  ZedThree

  authored
  dcda5d6

Commits on May 1, 2023

• Use petsc version 3.17.5 in examples,

  Show description for 37e4c60
  tomchapman

  committed
  37e4c60

• Update more example code snippets from make to cmake.

  Show description for 9227f88
  tomchapman

  committed
  9227f88

Commits on May 2, 2023

• provide VectorMetric in vectormetric.hxx

  Show description for 7d83874
  dschwoerer

  committed
  7d83874

• Add doc strings

  dschwoerer

  committed
  43839bf

• Allow to override version

  dschwoerer

  committed
  2b78d11

• Add help

  dschwoerer

  committed
  344ede7

• Add dist mode

  dschwoerer

  committed
  f2d00fa

• ignore dist files

  dschwoerer

  committed
  0744726

• Prefix next version with v

  dschwoerer

  committed
  f1a19a9

• Use boutpp backend for dist generation

  dschwoerer

  committed
  a20e3a6

• Merge pull request #2706 from boutproject/vectormetric

  Show description for 29de881
  ZedThree

  authored
  29de881

Commits on May 3, 2023

• Merge remote-tracking branch 'origin/master'

  dschwoerer

  committed
  b6fbcc7

• The additional check is not needed

  Show description for dfe527f
  dschwoerer

  committed
  dfe527f

• Apply clang-format changes

  

  dschwoerer

  authored and

  github-actions[bot]

  committed
  73319f0

Commits on May 11, 2023

• Merge pull request #2710 from boutproject/transform-no-extra

  Show description for 3c06094
  ZedThree

  authored
  3c06094

Commits on May 12, 2023

• Use petsc version 3.19.1 in examples,

  Show description for a608709
  tomchapman

  committed
  a608709

Commits on May 16, 2023

• Merge branch 'next' of github.com:boutproject/BOUT-dev into docker-ci

  dschwoerer

  committed
  ba05e3d

Commits on May 23, 2023

• Switch to github container registry

  dschwoerer

  committed
  67f15b7

• Fix docker.yml

  dschwoerer

  committed
  46b2d41

• Use commit for building

  dschwoerer

  committed
  258417e

• Use actual URL

  dschwoerer

  committed
  b1fbcc2

• CI: fix tag

  dschwoerer

  committed
  f851f6e

• CI: simplify git submodule update

  dschwoerer

  authored
  57d5cba

Commits on Jun 8, 2023

• Use AUTO rather than MAYBE for finding python

  dschwoerer

  committed
  a7b99e7

• Use AUTO for LAPACK

  Show description for 6f3711d
  dschwoerer

  committed
  6f3711d

• ENV setup is done in base image

  dschwoerer

  committed
  ec014fd

Commits on Jun 14, 2023

• Merge branch 'ci-cmake-only' into ci-cmake-only

  dschwoerer

  authored
  c6372b2

• Merge pull request #2694 from tomc271/ci-cmake-only

  Show description for ef62270
  dschwoerer

  authored
  ef62270

• Merge remote-tracking branch 'origin/next' into ci-cmake-only

  dschwoerer

  committed
  23f8939

• Merge pull request #2514 from boutproject/ci-cmake-only

  Show description for f695441
  ZedThree

  authored
  f695441

• Merge branch 'master' into dist-via-boutpp

  Show description for efb2fbf
  ZedThree

  committed
  efb2fbf

• Merge pull request #2628 from boutproject/cmake-install-paths

  Show description for ebc0051
  ZedThree

  authored
  ebc0051

• CI: Bump version of clang-tidy-review

  ZedThree

  committed
  e98a06a

• CI: Disable incredibly annoying cognitive complexity check

  ZedThree

  committed
  9a663da

• Merge branch 'next' into v5.1.0-rc

  Show description for 4342888
  ZedThree

  committed
  4342888

• use contextlib.suppress to ignore KeyError

  Show description for 0892ba3
  

  dschwoerer

  and

  ZedThree

  authored
  0892ba3

• Do not set -march=native as the compiled code is cached and runs on different CPUs

  dschwoerer

  committed
  8b05b48

• add missing import

  dschwoerer

  authored
  1e758f0

Commits on Jun 15, 2023

• Fix FV::Div_a_Grad_perp Y alignment

  Show description for 15683c5
  bendudson

  committed
  15683c5

• boutdata requires natsort

  Show description for d99fab3
  bendudson

  committed
  d99fab3

• CI: Fix cmake flags

  dschwoerer

  committed
  3fbe325

• User setup has been moved to base image

  dschwoerer

  committed
  525742b

• Merge remote-tracking branch 'origin/v5.1.0-rc' into docker-ci

  dschwoerer

  committed
  5cbcb43

• Apply clang-format changes

  

  dschwoerer

  authored and

  github-actions[bot]

  committed
  def3381

• Fix default value for BOUT_ENABLE_PYTHON

  dschwoerer

  committed
  bad0029

• cmake: Ensure libraries are prefixed with -l

  dschwoerer

  committed
  a002a38

• Merge pull request #2723 from boutproject/ci-install-natsort

  Show description for 7bcec6f
  bendudson

  authored
  7bcec6f

Commits on Jun 16, 2023

• CI: Fix disabling checks

  dschwoerer

  committed
  d9c6bce

• Merge branch 'v5.1.0-rc' into ci-fix-static

  dschwoerer

  committed
  3a96812

• Revert "Workaround for finding SUNDIALS"

  Show description for 8c4f8af
  dschwoerer

  committed
  8c4f8af

• Merge remote-tracking branch 'origin/v5.1.0-rc' into HEAD

  dschwoerer

  committed
  269f6f7

Commits on Jun 17, 2023

• Merge pull request #2725 from boutproject/revert-sundials-detection

  Show description for 6327eff
  bendudson

  authored
  6327eff

Commits on Jun 19, 2023

• Merge pull request #2724 from boutproject/ci-fix-static

  Show description for 80fc47e
  ZedThree

  authored
  80fc47e

• Merge pull request #2726 from boutproject/bump-clang-tidy-review

  Show description for 68d95c3
  ZedThree

  authored
  68d95c3

• Merge branch 'v5.1.0-rc' into dist-via-boutpp

  ZedThree

  authored
  8dd09bc

Commits on Jun 20, 2023

• Merge branch 'v5.1.0-rc' into docker-ci

  dschwoerer

  committed
  06d2afd

Commits on Jun 28, 2023

• Update to dnf5

  dschwoerer

  committed
  619f427

Commits on Jun 30, 2023

• Merge pull request #2731 from boutproject/dnf5

  Show description for 2d283d0
  ZedThree

  authored
  2d283d0

• Merge pull request #2511 from boutproject/docker-ci

  Show description for 20bd285
  ZedThree

  authored
  20bd285

• Merge pull request #2708 from boutproject/dist-via-boutpp

  Show description for dfc0c75
  ZedThree

  authored
  dfc0c75

Commits on Jul 2, 2023

• Improving compatibility with fmt 10

  dschwoerer

  committed
  b5e9a06

• Add helper for ierr checking

  dschwoerer

  committed
  0511a00

• Use helper for snes error

  dschwoerer

  committed
  6eba599

• Use new ierr checker

  dschwoerer

  committed
  4f0abf0

• Explicitly cast to int for fmt10

  dschwoerer

  committed
  cfd091d

• Static cast also for printing

  dschwoerer

  committed
  8bc3943

• Add missing include

  dschwoerer

  committed
  323ded4

• Add missing include

  dschwoerer

  committed
  4418065

• SNESGetConvergedReasonString was introduced only in PETSc 3.15

  dschwoerer

  committed
  784b8d0

• Apply clang-format changes

  

  dschwoerer

  authored and

  github-actions[bot]

  committed
  0f0a354

Commits on Jul 12, 2023

• Remove h5py - we only support netcdf

  dschwoerer

  committed
  f95c277

Commits on Jul 26, 2023

• Merge pull request #2735 from boutproject/no-h5py

  Show description for 6082b4a
  bendudson

  authored
  6082b4a

• Merge pull request #2730 from boutproject/fmt10

  Show description for 9c22f24
  ZedThree

  authored
  9c22f24

Commits on Aug 6, 2023

• Merge branch 'v5.1.0-rc' into bugfix-fvops-yalign

  bendudson

  committed
  f5b352a

• Merge pull request #2722 from boutproject/bugfix-fvops-yalign

  Show description for 2e4fdbf
  bendudson

  authored
  2e4fdbf

Commits on Sep 13, 2023

• Update RELEASE_HOWTO.md

  dschwoerer

  authored
  70c808e

• Merge branch 'v5.1.0-rc' into dschwoerer-patch-1

  dschwoerer

  authored
  fce2e70

Commits on Sep 14, 2023

• Merge pull request #2741 from boutproject/dschwoerer-patch-1

  Show description for 9e734c9
  bendudson

  authored
  9e734c9

Commits on Sep 21, 2023

• Maint: Update changelog

  ZedThree

  committed
  a24a359

Commits on Sep 22, 2023

• Maint: Update translation files

  ZedThree

  committed
  0c4d702

• Maint: Bump version to v5.1.0

  ZedThree

  committed
  ac5e5d5

• Maint: Add Tom Chapman to citation file

  ZedThree

  committed
  0e41029

• Maint: Update DOI

  ZedThree

  committed
  4adda14

Commits on Oct 4, 2023

• Maint: Update release date

  Show description for 8ae5e35
  ZedThree

  committed
  8ae5e35