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test_and_deploy.yml
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name: tests
on:
push:
branches:
- "main"
tags:
- "v**"
pull_request:
schedule:
# Runs at 6:10am UTC on Monday
- cron: '10 6 * * 1'
workflow_dispatch:
jobs:
linting:
runs-on: ubuntu-latest
steps:
- uses: neuroinformatics-unit/actions/lint@v2
manifest:
runs-on: ubuntu-latest
steps:
- uses: neuroinformatics-unit/actions/check_manifest@v2
get-week-number:
runs-on: ubuntu-latest
outputs:
WEEK_NUMBER: ${{ steps.get-week-number.outputs.WEEK_NUMBER }}
steps:
- name: Get week number
id: get-week-number
run: echo "WEEK_NUMBER=$(date -u '+%V')" >> "$GITHUB_OUTPUT"
test:
needs: [linting, manifest, get-week-number]
name: ${{ matrix.os }} py${{ matrix.python-version }}
runs-on: ${{ matrix.os }}
strategy:
matrix:
# Run all supported Python versions on linux
os: [ubuntu-latest]
python-version: ["3.10", "3.11", "3.12"]
# Include one windows and two macOS (intel based and arm based) runs
include:
- os: macos-13
python-version: "3.12"
- os: macos-latest
python-version: "3.12"
- os: windows-latest
python-version: "3.12"
steps:
- name: Cache atlases
uses: actions/cache@v4
with:
path: | # ensure we don't cache any interrupted atlas download and extraction, if e.g. we cancel the workflow manually
~/.brainglobe
!~/.brainglobe/atlas.tar.gz
key: brainglobe-${{ runner.os }}-${{ needs.get-week-number.outputs.WEEK_NUMBER }}
restore-keys: |
brainglobe-${{ runner.os }}-${{ needs.get-week-number.outputs.WEEK_NUMBER }}
brainglobe-${{ runner.os }}-
brainglobe
- uses: neuroinformatics-unit/actions/test@v2
with:
python-version: ${{ matrix.python-version }}
secret-codecov-token: ${{ secrets.CODECOV_TOKEN }}
- name: Notify slack on scheduled failure
if: failure() && github.event_name == 'schedule'
uses: ravsamhq/notify-slack-action@v2
with:
status: ${{ job.status }} # required
notify_when: 'failure'
env:
SLACK_WEBHOOK_URL: ${{ secrets.SLACK_NOTIFYBOT_WEBHOOK_URL }} # required
build_sdist_wheels:
name: Build source distribution and wheel
needs: [test]
if: github.event_name == 'push' && github.ref_type == 'tag'
runs-on: ubuntu-latest
steps:
- uses: neuroinformatics-unit/actions/build_sdist_wheels@v2
upload_all:
name: Publish build distributions
needs: [build_sdist_wheels]
if: github.event_name == 'push' && github.ref_type == 'tag'
runs-on: ubuntu-latest
steps:
- uses: neuroinformatics-unit/actions/upload_pypi@v2
with:
secret-pypi-key: ${{ secrets.TWINE_API_KEY }}