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I have prepared a simple port here: https://github.com/seihan/arduino-pulsoxy
This is just a 'throw the C files into an Arduino project' approach. Are you looking for consistency only in the build system or should it all be translated into clean Arduino-style C++?
I also opened pull request #8 to import the project.
Code for Microcontroller was written in Atmel-Studio and needs to be rewritten in Arduino-Code for consitancy
Link to code
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