Python scripts to create reference genome files (e.g. Genbank) from various inputs (e.g. vcf)
We use virtualenv.
$ virtualenv venv
$ source venv/bin/activate .
(venv) $ pip install -r requirements.txt
Do not modify requirements.txt by hand. After installing new requirements through pip, run:
(venv) $ pip freeze > requirements.txt
We use nose for testing. Running the following from the top-level directory should work:
(venv) $ nosetests