people.md

CBIL People

2022 version. (CBIL shut down at the end of that year)

Faculty / Academic	Position
Christian Stoeckert	Research Professor, Genetics
Emily Greenfest-Allen	Senior Research Investigator
Jie Zheng	Senior Research Investigator

Staff	Position
Ana Barreto	Database Administrator
John Brestelli	Application Developer Sr.
Brian Brunk	VEuPathDB Project Manager
Ryan Doherty	Senior Programmer Analyst
Steve Fischer	Senior Programmer Analyst
Bindu Gajria	Senior Programmer Analyst
Omar Harb	Biology Research Specialist
Sufen Hu	Programmer Analyst
Tom Hutchinson	Software Engineer
John Iodice	Bioinformatics Software Engineer
John Judkins	Ontologist
Wei Li Programmer	Analyst

Pictured from left to right: Sufen Hu, John Brestelli, Emily Greenfest-Allen, Bindu Gajria, Angel Pizaro, Jie Zheng, Chris Stoeckert, Deborah Pinney, Steve Fischer, Jonathan Schug, John Iodice, Cris Lawrence, Elisabetta Manduchi, Greg Grant.

Alumni

Faculty / Academic	Position
Gregory Grant	Research Associate Professor, Genetics

Student	Advisor(s)	Dates	Project / Thesis	Current Position
Kobby Essien	Christian Stoeckert	2004 - 2009	Computational approaches for studying transcriptional regulation in Plasmodium and other apicomplexan parasites	Associate Product Manager at Reata Pharmaceuticals
Gary/Guang Chen	Christian Stoeckert	2003 - 2007	Identifying transcriptional regulatory modules and networks by integrative approaches	Sr. Statistician at Celgene
Li Li	David Roos and Christian Stoeckert	1999 - 2004	Eukaryotic ortholog groups and comparative genomics: applications to apicomplexan parasites	Senior Computational Biologist at Genentech
Jonathan Schug	Max Mintz and Christian Stoeckert	1995 - 2005	Integrating gene expression signals with bounded collection grammars	Technical Director, NGSC; IDOM DRC Functional Genomics Core at University of Pennsylvania Perelman School of Medicine

Post-doc	Advisor(s)	Dates	Project / Thesis	Current Position
Tiziana Sanavia	Barbara Di Camillo and Christian Stoeckert	2012-2013	Genomic analysis and computational methods for studying the development of pancreatic beta cells	Assistant Professor at University of Turin
Chiao Feng Lin	Christian Stoeckert	2008 - 2010	Beta Cell Biology Consortium, functional genomics of the pancreas, ChIP-seq analysis	Post-doc, Wang Lab at University of Pennsylvania Perelman School of Medicine
Ghislain Bidaut	Christian Stoeckert	2005 - 2007	Neural net analysis of stem cell differentiation, Stem Cell Gene Anatomy Project (SCGAP), plasmoMAP	Head of Bioinformatics at Inserm
Shailesh Date	Christian Stoeckert, David Roos	2004 - 2008	Plasmodium falciparum interactome, plasmoMAP	Scientist at Genentech
Hongxian He	Christian Stoeckert	2002 - 2005	Stem Cell Gene Anatomy Project (SCGAP), RNA Abundance Database (RAD)	Technical Supervisor at DuPont
Matt Mailman	Christian Stoeckert	2001 - 2003	PlasmoDB, RNA Abundance Database	Director of Integrative Solutions, Neuroscience at Johnson & Johnson

Staff	Position
Ja'Shon Cade	Programmer Analyst
Hayden Freedman	Programmer Analyst
Cris Lawrence	Senior Web Developer
Elisabetta Manduchi	Research Project Manager, Senior Bioinformatics Scientist
Mark Miller	Ontologist
Deborah Pinney	Application Developer Sr.