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Fiber photometry analysis pipeline developed from Christelle Cayton's code for Jocelyn Richard’s Lab at the University of Minnesota. Used for analyses including those reported in Palmer et al., 2023.

Overview

Workflow containing MATLAB, Python, and R code for:

  • Analysis of DS Task performance
  • Analysis of Optogenetic manipulations including
    • DS Task with cue-paired optogenetic manipulation sessions
    • Lever choice task with reward-paired optogenetic manipulation sessions
    • Intracranial Self Stimulation (ICSS) sessions

Note about use/adapting:

Specifically designed for use with Christelle Opto Dataset

Documentation- https://docs.google.com/document/d/1F94Xec-_-rlkjDg2zOuTywmcFhVd6r0DPPxrp7Jz_Ag/edit?usp=sharing

  • Aimed to analyze data generated from MED Associates MPC2XL Row Profiles