pyproject.toml

[build-system]
requires = [
    'setuptools>=65.0.0',
    'wheel'
]
build-backend = 'setuptools.build_meta'


[project]
name = 'triplix'
version = '0.0.5'
description = 'A python package to efficiently process, store and retrieve spatial genomics multi-contact data'
readme = 'README.md'
authors = [{ name = 'Amin Allahyar', email = 'amin.allahyar@gmail.com' }]
license = { file = 'LICENSE' }
classifiers = [
    'License :: OSI Approved :: MIT License',
    'Programming Language :: Python',
    'Programming Language :: Python :: 3',
]
keywords = ['Bioinformatics', 'Genome', '3D Genome Conformation', 'Multi-contact']
dependencies = [
    'numpy >= 1.22.2',
    'pandas >= 1.5.1',
    'matplotlib >= 3.5.1',
    'pysam >= 0.21.0',
    'h5py >= 3.7.0',
    'joblib >= 1.1.0',
    'scipy >= 1.7.3',
    'scikit-learn >= 1.1.2',
    'tomli; python_version < "3.11"',
    'pypairix >= 0.3.7',
    'igraph >= 0.9.10',
    'fasteners >= 0.18',
]
requires-python = '>=3.9'

# [project.optional-dependencies]
# dev = ['black', 'bumpver', 'isort', 'pip-tools', 'pytest']

[project.urls]
Homepage = 'https://github.com/deLaatLab/triplix'

[project.scripts]
triplix = 'triplix.__main__:main'