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CHANGELOG.md

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[1.1.2] - 2017-07-16

  • Changed a description line in the getClusterPrivacy() doc to fix installation under some R3.6 versions (issue 32)

[1.1.1] - 2019-07-15

Changed

  • Fixed docker build: use of BiocManager, reference to master instead of dev
  • Updated src/Makevars to remove the CXX directive, which trips up older versions of R (3.2.x)

[1.1.0] - 2019-07-02

Added

  • Support for CCA space

Changed

  • buildGraph now use PCA space as the default
  • fixed common variance rescaling to use geometric mean of the target

[1.0.3] - 2019-07-02

Added

  • Support for Seurat v3 objects

[1.0.2] - 2019-06-26

Added

  • Functions to export Conos object to ScanPy

[1.0.1] - 2019-05-1

Fixed

  • Default value for cluster.sep.chr in DE functions is changed from '+' to '<!!>', as it shouldn't be normally present in cluster names
  • Removed Boost dependency
  • Fixed version of Seurat and fpc packages in Docker

[1.0.0] - 2019-04-17

Fixed

  • Fixed ggplot2 namespace for function calls in plotClusterStability
  • Renamed stable.tree.clusters, get.cluster.graph and scan.k.modularity
  • Removed exports of largeVis internals, get.cluster.graph and get_nearest_neighbors
  • embedding is stored with samples by rows now (i.e. not transposed anymore)
  • Using scale.data instead of data in Seurat if provided

Deprecated

  • multitrap.community and multimulti.community functions

[0.1.0] - 2019-04-17

Added

  • Pre-release version