DESCRIPTION

Package: conos
Title: Clustering on Netowrk of Samples
Version: 1.1.2
Authors@R: c(person("Peter", "Kharchenko", email = "peter_kharchenko@hms.harvard.edu", role = c("aut", "cre")),
             person("Nikolas","Barkas", email="nikolas_barkas@hms.harvard.edu", role="aut"),
             person("Viktor","Petukhov", email="viktor.s.petuhov@ya.ru", role="aut"))
Description: Wire together large collections of single-cell RNA-seq datasets. The package focuses on uniform
  mapping of homologous cell types across heterogeneous sample collections. For instance, a collection of
  dozens of peripheral blood samples from cancer patients, combined with dozens of controls. And perhaps also
  including samples of a related tissue, such as lymph nodes.
Depends: R (>= 3.2.1), Matrix, igraph
License: GPL3
Encoding: UTF-8
LazyData: true
Imports:
  abind,
  cowplot,
  d3heatmap,
  dendextend,
  dplyr,
  entropy,
  ggplot2,
  ggrepel,
  gridExtra,
  heatmaply,
  irlba,
  magrittr,
  Matrix.utils,
  methods,
  parallel,
  reshape2,
  Rcpp,
  RcppArmadillo,
  RcppProgress,
  rlang,
  Rtsne,
  shiny,
  stats,
  utils,
  viridis
Suggests:
  DESeq2,
  entropy,
  ggrastr,
  knitr,
  pbapply,
  rmarkdown,
  Seurat,
  shinycssloaders
VignetteBuilder: knitr
RoxygenNote: 6.1.1
LinkingTo: Rcpp, RcppArmadillo, RcppEigen, RcppProgress, igraph
NeedsCompilation: yes