Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Update go-citation-policy.md #296

Open
wants to merge 1 commit into
base: master
Choose a base branch
from
Open
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
9 changes: 5 additions & 4 deletions _docs/go-citation-policy.md
Original file line number Diff line number Diff line change
Expand Up @@ -17,10 +17,11 @@ We ask that whenever using the GO and/or annotations in a publication, please ci


If you used a specific software/analysis tool in your research, in addition to the two publications above, please also cite the tool used according to the following list:
+ **GO Enrichment Analysis**: Mi H, Huang X, Muruganujan A, Tang H, Mills C, Kang D, Thomas PD. PANTHER version 14: more genomes, a new PANTHER GO-slim and improvements in enrichment analysis tools. Nucleic Acids Res. Jan 2019;47(D1):D419-D426. \[[abstract](https://www.ncbi.nlm.nih.gov/pubmed/30407594){:target="blank"} \| [full text](https://academic.oup.com/nar/article/47/D1/D419/5165346){:target="blank"}\]
+ **AmiGO**: Carbon S, Ireland A, Mungall CJ, Shu S, Marshall B, Lewis S, AmiGO Hub, Web Presence Working Group. AmiGO: online access to ontology and annotation data. Bioinformatics. Jan 2009;25(2):288-289. \[[abstract](https://www.ncbi.nlm.nih.gov/pubmed/19033274){:target="blank"} \| [full text](http://bioinformatics.oxfordjournals.org/content/25/2/288.full.pdf+html){:target="blank"}\]
+ **OBO-Edit**: Day-Richter J, Harris MA, Haendel M, Gene Ontology OBO-Edit Working Group, Lewis S. OBO-Edit--an ontology editor for biologists. Bioinformatics. Aug 2007;23(16):2198-200. \[[abstract](http://bioinformatics.oxfordjournals.org/content/23/16/2198){:target="blank"} \| [full text](http://bioinformatics.oxfordjournals.org/content/23/16/2198.full){:target="blank"}\]

* **GO Enrichment Analysis**: Mi H, Huang X, Muruganujan A, Tang H, Mills C, Kang D, Thomas PD. PANTHER version 14: more genomes, a new PANTHER GO-slim and improvements in enrichment analysis tools. Nucleic Acids Res. Jan 2019;47(D1):D419-D426. \[[abstract](https://www.ncbi.nlm.nih.gov/pubmed/30407594){:target="blank"} \| [full text](https://academic.oup.com/nar/article/47/D1/D419/5165346){:target="blank"}\]
* **AmiGO**: Carbon S, Ireland A, Mungall CJ, Shu S, Marshall B, Lewis S, AmiGO Hub, Web Presence Working Group. AmiGO: online access to ontology and annotation data. Bioinformatics. Jan 2009;25(2):288-289. \[[abstract](https://www.ncbi.nlm.nih.gov/pubmed/19033274){:target="blank"} \| [full text](http://bioinformatics.oxfordjournals.org/content/25/2/288.full.pdf+html){:target="blank"}\]
* **OBO-Edit**: Day-Richter J, Harris MA, Haendel M, Gene Ontology OBO-Edit Working Group, Lewis S. OBO-Edit--an ontology editor for biologists. Bioinformatics. Aug 2007;23(16):2198-200. \[[abstract](http://bioinformatics.oxfordjournals.org/content/23/16/2198){:target="blank"} \| [full text](http://bioinformatics.oxfordjournals.org/content/23/16/2198.full){:target="blank"}\]
* **GO-CAM**: Thomas PD, Hill DP, Mi H, Osumi-Sutherland D, Van Auken K, Carbon S, Balhoff JP, Albou LP, Good B, Gaudet P, Lewis SE, Mungall CJ. Gene Ontology Causal Activity Modeling (GO-CAM) moves beyond GO annotations to structured descriptions of biological functions and systems. Nat Genet. Oct 2019;51(10):1429-1433. \[[abstract](https://pubmed.ncbi.nlm.nih.gov/31548717/){:target="blank"} \| [full text](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7012280/){:target="blank"}\]
* Individual models have a stable URI, which is in the format http://model.geneontology.org/6115be0900000600

If you produce tools and/or services that use GO data, the user should be provided with the GO release date and DOI along with the results (e.g. "2019-01-01" and "doi:[10.5281/zenodo.2529950](https://dx.doi.org/10.5281/zenodo.2529950){:target="blank"}").

Expand Down