Obsoletion notice: GO:0015680 protein maturation by copper ion transfer, GO:0097428 protein maturation by iron-sulfur cluster transfer, GO:0110147 protein maturation by nickel ion transfer, GO:0022417 protein maturation by protein folding, GO:0106034, GO:0106035

[edwong57]

Dear all,

The proposal has been made to obsolete:
GO:0015680 protein maturation by copper ion transfer
GO:0097428 protein maturation by iron-sulfur cluster transfer
GO:0110147 protein maturation by nickel ion transfer
GO:0022417 protein maturation by protein folding
GO:0106034 protein maturation by [2Fe-2S] cluster transfer
GO:0106035 protein maturation by [4Fe-4S] cluster transfer

The reason for obsoletion is that these BP terms represent MFs.

Annotations:
There are 211 experimental annotations to this term by (list of impacted groups and their respective numbers of EXP and ISS annotations).

SGD 28
PomBase 11
TAIR 5
ComplexPortal 3
EcoCyc 25
EcoliWiki 1
FlyBase 10
UniProt 101
WB 1
MGI 15
PINC 1
CACAO 2
HGNC-UCL 3
BHF-UCL 3
Alzheimers_University_of_Toronto 1

There are 10 InterPro2GO/UniRule/UniProtKW mappings to this term.

These terms are not present in any subset.

Annotations can be viewed here: geneontology/go-annotation#5490

These terms will be replaced by the parent GO:0051604 protein maturation.

In addition, curators should consider whether MF annotations should be added:

GO:0015680 protein maturation by copper ion transfer >> consider copper chaperone activity
GO:0022417 protein maturation by protein folding >> consider protein folding chaperone
GO:0110147 protein maturation by nickel ion transfer >>GO:0170061 nickel chaperone activity (NTR -geneontology/go-ontology#29115)
GO:0097428 protein maturation by iron-sulfur cluster transfer >> consider : iron-sulfur cluster carrier activity

Any comments can be added to the issue: geneontology/go-ontology#29105.
Unless objections are received by Nov 1, we will assume that you agree to this change.

Thanks,

The GO-Ontology Editors