Obsoletion request: GO:1901004 ubiquinone-6 metabolic process (& children)

[sjm41]

Please provide as much information as you can:

• GO term ID and Label

GO:1901004 ubiquinone-6 metabolic process (0 direct annotations)
    |_GO:1901006 ubiquinone-6 biosynthetic process (4 EXP annotations by SGD)
    |_GO:1901005 ubiquinone-6 catabolic process (0 annotations)

• Reason for deprecation Put an x in the appropriate box:

• The reason for obsoletion is that the data from the paper for which the term was requested can be accurately described using [appropriate GO term].

• "Replace by" term (ID and label)
  GO:0006744 ubiquinone biosynthetic process

• Are there annotations to this term?

• see above

• Are there mappings and cross references to this term? (InterPro, Keywords; check QuickGO cross-references section)
  No

• Is this term in a subset? (check the AmiGO page for that term)
  No.

• Any other information
  S. cerevisiase makes ubiquinone-6, but other taxa make ubiquinone-10, ubiquinone-8 etc and we don't have terms for those. We don't want to make a bunch of taxa-specific BPs, so better just to have a single "GO:0006744 ubiquinone biosynthetic process" that can be used across the board.
  Also see ubiquinone biosynthesis process clean up #29313

---

Checklist for ontology editor

Check term usage and metadata in Protégé

• check term usage in the ontology
• check internal mappings: RHEA, EC, MetaCyc
• check subset usage
• check taxon constraints

Check annotations

• create Annotation Review spreadsheet
• • Annotation Review template: https://docs.google.com/spreadsheets/d/1izV3q1jnq_Ybg5MJ53O_b5BCTkGtjl_Fi-cOg3-7eBE/edit#gid=0
• • Instructions: https://wiki.geneontology.org/Annotation_Review_Request
• create annotation review ticket: https://github.com/geneontology/go-annotation/issues/new?assignees=&labels=annotation+review&template=annotation-review-for-obsoletion.md&title=Review+annotations+to+%5BINSERT+GO+TERM%5D
• find external mappings (via IEAS), include in obsoletion notice
• tag curators in Annotation Review ticket. Responsible annotator for each group: https://github.com/geneontology/go-site/blob/master/metadata/group-contacts.csv

Notification

• create obsoletion announcement
• announce to GO friends ([email protected])
• paste the text in the ontology ticket