Code

Json export in LinkML#282

Code

Merged

sierra-moxon merged 35 commits intojson-exportgeneontology/go-shapes:json-exportfrom json-export-linkmlgeneontology/go-shapes:json-export-linkmlCopy head branch name to clipboardNov 2, 2022

+1,845-54

Commits

Commits on Oct 24, 2022

• convert shex json output to linkml: draft

  sierra-moxon

  committed
  9c40b69

• adding json representation here for reference in PR review, its a small file so I think its ok

  sierra-moxon

  committed
  92bf97e

• start converting to LinkML

  sierra-moxon

  committed
  9f90374

• adding tests, starting to refactor to LinkML version of json_export

  sierra-moxon

  committed
  6b14a45

• add schemaview test

  sierra-moxon

  committed
  f2834d8

• fixing tests

  sierra-moxon

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  b660d50

Commits on Oct 25, 2022

• refactoring range union

  sierra-moxon

  committed
  893546a

Commits on Oct 26, 2022

• more sample schemas

  sierra-moxon

  committed
  ff3a9df

• add some test data

  sierra-moxon

  committed
  e8b2719

• adding test data

  sierra-moxon

  committed
  9eb2151

• make jsonschema restrictive of additional properties to shape class

  sierra-moxon

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  8e42b60

• minor touches

  sierra-moxon

  committed
  ab649db

• fixing tests

  sierra-moxon

  committed
  1d8aefd

• adding jsonschema and pydantic generation to the makefile

  sierra-moxon

  committed
  65b9fbc

• remove cardinality

  sierra-moxon

  committed
  329b2da

Commits on Oct 27, 2022

• add output to the repo

  sierra-moxon

  committed
  fd9e1de

• add json python typescript outputs

  sierra-moxon

  committed
  e56b332

Commits on Oct 28, 2022

• stashing changes to update from master

  sierra-moxon

  committed
  1d34556

• Merge branch 'json-export' into json-export-linkml

  sierra-moxon

  committed
  37a1d33

• adding required properties to the slots. adding class descriptions

  sierra-moxon

  committed
  cb61fb5

• adding required properties to the slots. adding class descriptions

  sierra-moxon

  committed
  a9fd50c

• adding required properties to the slots. adding class descriptions

  sierra-moxon

  committed
  ec27978

• add target directory under python to store autogenerated artifacts except the python file which is autogenerated but stored in the python directory to make imports easier.

  sierra-moxon

  committed
  95df950

• adding generated outputs to the git repo

  sierra-moxon

  committed
  d8e17d0

• move some of the outputs around so that we can consistently produce them

  sierra-moxon

  committed
  91b267c

• regenerate python fil

  sierra-moxon

  committed
  abeec91

• update to fix paths

  sierra-moxon

  committed
  96e3e40

• fixing test paths

  sierra-moxon

  committed
  9b6998e

• add target output directory to hold generated content

  sierra-moxon

  committed
  0529c29

• add typescript output directory, add single makefile target that does all the linkml regen

  sierra-moxon

  committed
  06350f2

Commits on Nov 2, 2022

• flatten data structure

  sierra-moxon

  committed
  1281a38

• add poetry config files

  sierra-moxon

  committed
  ad526e8

• remove older test data

  sierra-moxon

  committed
  beb70d5

• regenerate prodcuts

  sierra-moxon

  committed
  c36860e

• fix up export with correct classes

  sierra-moxon

  committed
  0a2a9d1