Code

Shex for Standard Annotations#319

Code

Merged

tmushayahama merged 49 commits intodevgeneontology/go-shapes:devfrom json-exportgeneontology/go-shapes:json-exportCopy head branch name to clipboardAug 23, 2024

+3,584-2,048

Commits

Commits on Nov 30, 2022

• Added gitignore to the python folder

  tmushayahama

  committed
  2653043

• Added gitignore to python folder

  tmushayahama

  committed
  9fa10ae

• fix: exclude_from_extensions to boolean from list of booleans

  tmushayahama

  committed
  bb16075

Commits on Dec 1, 2022

• inits on adding linkml for shex term metadata

  tmushayahama

  committed
  fe59fb4

• added more excluded from extension from noctua workbench call

  tmushayahama

  committed
  7865212

• fix actions syntax errors

  sierra-moxon

  committed
  2928775

• add schema prefix

  sierra-moxon

  committed
  c065ee8

• add an import for shex_json_linkml

  sierra-moxon

  committed
  fd4db53

Commits on Dec 8, 2022

• Adding the shex shorthand for overriding the labels

  tmushayahama

  committed
  51496e2

• Merge branch 'json-export' of https://github.com/geneontology/go-shapes into json-export

  tmushayahama

  committed
  f42f808

• Added root_subject on linkml and json export.py

  tmushayahama

  committed
  9e692ab

Commits on Dec 20, 2022

• Adding has_primary_input and has_primary_output to MF shape

  vanaukenk

  authored
  75935b3

• Merge pull request #295 from geneontology/vanaukenk-patch-15

  Show description for da98e4d
  vanaukenk

  authored
  da98e4d

• Adding has_primary_input and has_primary_output to transporter activity shape

  vanaukenk

  authored
  6c0ccd2

• Merge pull request #296 from geneontology/vanaukenk-patch-15

  Show description for 6c37c71
  vanaukenk

  authored
  6c37c71

Commits on Feb 2, 2023

• Update go-cam-shapes.shex

  Show description for f83e745
  vanaukenk

  authored
  f83e745

• Merge pull request #297 from geneontology/vanaukenk-patch-16

  Show description for ea9910b
  vanaukenk

  authored
  ea9910b

Commits on Mar 9, 2023

• Update go-cam-shapes.shex

  Show description for bc20e6e
  vanaukenk

  authored
  bc20e6e

Commits on Mar 10, 2023

• Merge pull request #300 from geneontology/vanaukenk-patch-16

  Show description for 7029cd6
  vanaukenk

  authored
  7029cd6

Commits on Dec 5, 2023

• Allow multiple enablers

  balhoff

  authored
  7510696

• Replace obsolete native cell with cell

  balhoff

  authored
  878330e

• Fix additional mentions of native cell

  balhoff

  authored
  c3c6a74

Commits on Dec 14, 2023

• Replace CHEBI term in test.

  balhoff

  committed
  292b1e0

• Merge branch 'broken-CI' into balhoff-patch-3

  balhoff

  committed
  8ddf833

• Merge pull request #304 from geneontology/balhoff-patch-3

  Show description for cf8ada5
  balhoff

  authored
  cf8ada5

• Merge branch 'master' into balhoff-patch-2

  balhoff

  committed
  ce6a6c6

• Merge pull request #303 from geneontology/balhoff-patch-2

  Show description for 3bedb1e
  balhoff

  authored
  3bedb1e

Commits on Mar 6, 2024

• Fix obsolete GO terms in test models. (#308)

  balhoff

  authored
  f017aae

Commits on Mar 19, 2024

• Create WIP_standard_annot_ShEx

  vanaukenk

  authored
  22fe43a

• Merge pull request #310 from geneontology/vanaukenk-patch-16

  Show description for ed0b67e
  vanaukenk

  authored
  ed0b67e

• Update WIP_standard_annot_ShEx

  vanaukenk

  authored
  c289f9a

• Merge pull request #311 from geneontology/vanaukenk-patch-17

  Show description for 64f97bd
  vanaukenk

  authored
  64f97bd

Commits on Mar 20, 2024

• resolve conflict

  tmushayahama

  committed
  84e894a

Commits on May 1, 2024

• Update go-cam-shapes.shex

  Show description for 3bab2e7
  vanaukenk

  authored
  3bab2e7

• Merge pull request #312 from geneontology/vanaukenk-patch-16

  Show description for 363464c
  vanaukenk

  authored
  363464c

Commits on May 2, 2024

• Update WIP_standard_annot_ShEx

  Show description for 3320990
  vanaukenk

  authored
  3320990

• Merge pull request #313 from geneontology/vanaukenk-patch-16

  Show description for 6d7897b
  vanaukenk

  authored
  6d7897b

Commits on May 9, 2024

• Update README.md

  Show description for 675934d
  vanaukenk

  authored
  675934d

• Update go-cam-shapes.shex

  Show description for 7a87fd5
  vanaukenk

  authored
  7a87fd5

Commits on May 10, 2024

• Update go-cam-shapes.shex

  Show description for 3734d2e
  vanaukenk

  authored
  3734d2e

• Update go-cam-shapes.shex

  Show description for 967a11e
  vanaukenk

  authored
  967a11e

Commits on May 13, 2024

• Update go-cam-shapes.shex

  Show description for f54cfdb
  vanaukenk

  authored
  f54cfdb

Commits on May 21, 2024

• Merge pull request #316 from geneontology/master

  Show description for 7c532a8
  tmushayahama

  authored
  7c532a8

• updated the json export code to use the curies lib

  tmushayahama

  committed
  636ab22

Commits on May 30, 2024

• Merge pull request #315 from geneontology/issue-noctua-standard-annotations-14-kva-draft

  Show description for 3835c79
  tmushayahama

  authored
  3835c79

Commits on Jun 4, 2024

• Update go-cam-shapes.shex

  vanaukenk

  authored
  5db4d99

Commits on Jun 5, 2024

• Now using the curies lib

  tmushayahama

  committed
  20f3b23

Commits on Jun 8, 2024

• Merge pull request #318 from geneontology/issue-noctua-standard-annotations-14-kva-draft

  Show description for 62c52c6
  tmushayahama

  authored
  62c52c6

Commits on Aug 23, 2024

• Merge branch 'dev' into json-export

  tmushayahama

  authored
  9a5d31f