diff --git a/docs/gorules_test_errors.gaf b/docs/gorules_test_errors.gaf index bbb32f8b..53c1a935 100644 --- a/docs/gorules_test_errors.gaf +++ b/docs/gorules_test_errors.gaf @@ -49,6 +49,8 @@ UniProtKB A0A078CGE6 M3KE1 enables GO:0004674 PMID:11489177 IPI F GORULE:000000 UniProtKB Q9DGE2 mapk14a is_active_in GO:0005622 PMID:10995439 IDA C GORULE:0000008-1 Mitogen-activated protein kinase 14A mapk14a|mapk14 protein taxon:7955 20180129 UniProt ! FAILS GORULE:0000008 - TEST 2 - GO:0007049 is in the subset gocheck_do_not_manually_annotate UniProtKB Q9WVH3 Foxo4 involved_in GO:0007049 PMID:12048180 IDA P GORULE:0000008-2 Forkhead box protein O4 Foxo4|Afx|Afx1 protein taxon:10090 20110425 MGI +! FAILS GORULE:0000008 - TEST 3 - also fails GORULE:0000051 - GO:0005488 is in the subset gocheck_do_not_manually_annotate +UniProtKB O76187 darA enables GO:0005488 PMID:9802899 IPI UniProtKB:P34149 F GORULE:0000051-1 & GORULE:0000008-3 Darlin darA protein taxon:44689 20100205 UniProt ! FAILS GORULE:0000011 - TEST 1 - because the GO ID is not one of GO:0003674, GO:0008150 or GO:0005575 UniProtKB Q4KA26 PFL_3807 is_active_in GO:0016020 GO_REF:0000015 ND C GORULE:0000011-1 Putative membrane protein PFL_3807 protein taxon:220664 20090717 JCVI ! FAILS GORULE:0000011 - TEST 2 - fails because the evidence code is not ND, even if the GO ID one of GO:0003674, GO:0008150 or GO:0005575. @@ -125,10 +127,10 @@ UniProtKB F1N2N9 ODAD1 part_of GO:0120228 PMID:34715025 ISS UniProtKB:F1N2N9 C G UniProtKB F1N2N9 ODAD1 part_of GO:0120228 PMID:34715025 ISO UniProtKB:F1N2N9 C GORULE:0000050-2 Outer dynein arm-docking complex subunit 1 ODAD1|CCDC114 protein taxon:9913 20220422 UniProt ! FAILS GORULE:0000050 - TEST 3 - self-referential ISA annotations UniProtKB F1N2N9 ODAD1 part_of GO:0120228 PMID:34715025 ISA UniProtKB:F1N2N9 C GORULE:0000050-3 Outer dynein arm-docking complex subunit 1 ODAD1|CCDC114 protein taxon:9913 20220422 UniProt -! FAILS GORULE:0000051 - Pass TEST 51 - Annotation extension for certain GO terms - protein binding; GO:0005515 -UniProtKB O76187 darA enables GO:0005515 PMID:9802899 IPI UniProtKB:P34149 F GORULE:0000051-1 Darlin darA protein taxon:44689 20100205 UniProt has_input(GO:0003674)|occurs_in(CL:123456) -! FAILS GORULE:0000051 - TEST 51 - Annotation extension is required for certain terms - binding GO:0005488 -UniProtKB O76187 darA enables GO:0005488 PMID:9802899 IPI UniProtKB:P34149 F GORULE:0000051-2 Darlin darA protein taxon:44689 20100205 UniProt +! FAILS GORULE:0000051 - Pass RULE 51 - Annotation extension for certain GO terms - protein binding; GO:0005515 +UniProtKB O76187 darA enables GO:0005515 PMID:9802899 IPI UniProtKB:P34149 F GORULE:0000051-PASS1 Darlin darA protein taxon:44689 20100205 UniProt has_input(GO:0003674)|occurs_in(CL:123456) +! FAILS GORULE:0000051 - TEST 1 - also fails GORULE:0000008 - Annotation extension is required for certain terms - binding GO:0005488 +UniProtKB O76187 darA enables GO:0005488 PMID:9802899 IPI UniProtKB:P34149 F GORULE:0000051-1 & GORULE:0000008-3 Darlin darA protein taxon:44689 20100205 UniProt ! FAILS GORULE:0000055 - TEST 1 - Two references in the same ID space - PMID PlasmoDB PF3D7_0200400 PF3D7_0200400 is_active_in GO:0020036 PMID:12477793|PMID:15961998 IDA C GORULE:0000055-1 stevor mRNA taxon:4896 20131007 GeneDB ! FAILS GORULE:0000055 - TEST 2 - Two references in the same ID space - GO_REF