Bump the all-dependencies group with 58 updates #24
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Bumps the all-dependencies group with 58 updates: | Package | From | To | | --- | --- | --- | | [linkml-runtime](https://github.com/linkml/linkml-runtime) | `1.7.7` | `1.8.3` | | [prefixmaps](https://github.com/linkml/prefixmaps) | `0.2.5` | `0.2.6` | | [pydantic](https://github.com/pydantic/pydantic) | `2.8.2` | `2.9.2` | | [pyyaml](https://github.com/yaml/pyyaml) | `6.0.1` | `6.0.2` | | [linkml](https://github.com/linkml/linkml) | `1.7.10` | `1.8.5` | | [pytest](https://github.com/pytest-dev/pytest) | `8.2.2` | `8.3.3` | | [attrs](https://github.com/sponsors/hynek) | `23.2.0` | `24.2.0` | | [bioregistry](https://github.com/biopragmatics/bioregistry) | `0.11.10` | `0.11.21` | | [cachetools](https://github.com/tkem/cachetools) | `5.3.3` | `5.5.0` | | [certifi](https://github.com/certifi/python-certifi) | `2024.6.2` | `2024.8.30` | | [charset-normalizer](https://github.com/Ousret/charset_normalizer) | `3.3.2` | `3.4.0` | | [curies](https://github.com/biopragmatics/curies) | `0.7.9` | `0.9.0` | | [et-xmlfile](https://foss.heptapod.net/openpyxl/et_xmlfile) | `1.1.0` | `2.0.0` | | [exceptiongroup](https://github.com/agronholm/exceptiongroup) | `1.2.1` | `1.2.2` | | [google-api-core](https://github.com/googleapis/python-api-core) | `2.19.1` | `2.22.0` | | [google-api-python-client](https://github.com/googleapis/google-api-python-client) | `2.134.0` | `2.151.0` | | [google-auth](https://github.com/googleapis/google-auth-library-python) | `2.30.0` | `2.35.0` | | [google-auth-oauthlib](https://github.com/GoogleCloudPlatform/google-auth-library-python-oauthlib) | `1.2.0` | `1.2.1` | | [googleapis-common-protos](https://github.com/googleapis/python-api-common-protos) | `1.63.2` | `1.65.0` | | [greenlet](https://github.com/python-greenlet/greenlet) | `3.0.3` | `3.1.1` | | [gspread](https://github.com/burnash/gspread) | `6.1.2` | `6.1.4` | | [idna](https://github.com/kjd/idna) | `3.7` | `3.10` | | [importlib-metadata](https://github.com/python/importlib_metadata) | `8.0.0` | `8.5.0` | | [isodate](https://github.com/gweis/isodate) | `0.6.1` | `0.7.2` | | [jsonpath-ng](https://github.com/h2non/jsonpath-ng) | `1.6.1` | `1.7.0` | | [jsonschema](https://github.com/python-jsonschema/jsonschema) | `4.22.0` | `4.23.0` | | [jsonschema-specifications](https://github.com/python-jsonschema/jsonschema-specifications) | `2023.12.1` | `2024.10.1` | | [markdown](https://github.com/Python-Markdown/markdown) | `3.6` | `3.7` | | [markupsafe](https://github.com/pallets/markupsafe) | `2.1.5` | `3.0.2` | | [mkdocs](https://github.com/mkdocs/mkdocs) | `1.6.0` | `1.6.1` | | [numpy](https://github.com/numpy/numpy) | `2.0.0` | `2.0.2` | | [openpyxl](https://openpyxl.readthedocs.io) | `3.1.4` | `3.1.5` | | [pandas](https://github.com/pandas-dev/pandas) | `2.2.2` | `2.2.3` | | [platformdirs](https://github.com/tox-dev/platformdirs) | `4.2.2` | `4.3.6` | | [proto-plus](https://github.com/googleapis/proto-plus-python) | `1.24.0` | `1.25.0` | | [protobuf](https://github.com/protocolbuffers/protobuf) | `5.27.2` | `5.28.3` | | [pyasn1](https://github.com/pyasn1/pyasn1) | `0.6.0` | `0.6.1` | | [pyasn1-modules](https://github.com/pyasn1/pyasn1-modules) | `0.4.0` | `0.4.1` | | [pydantic-core](https://github.com/pydantic/pydantic-core) | `2.20.1` | `2.23.4` | | [pymdown-extensions](https://github.com/facelessuser/pymdown-extensions) | `10.8.1` | `10.12` | | [pyparsing](https://github.com/pyparsing/pyparsing) | `3.1.2` | `3.2.0` | | [pystow](https://github.com/cthoyt/pystow) | `0.5.4` | `0.5.6` | | [pytz](https://github.com/stub42/pytz) | `2024.1` | `2024.2` | | [rdflib](https://github.com/RDFLib/rdflib) | `7.0.0` | `7.1.1` | | [rpds-py](https://github.com/crate-py/rpds) | `0.18.1` | `0.20.1` | | ruamel-yaml-clib | `0.2.8` | `0.2.12` | | [setuptools](https://github.com/pypa/setuptools) | `70.1.1` | `75.3.0` | | [soupsieve](https://github.com/facelessuser/soupsieve) | `2.5` | `2.6` | | [sqlalchemy](https://github.com/sqlalchemy/sqlalchemy) | `2.0.31` | `2.0.36` | | [termcolor](https://github.com/termcolor/termcolor) | `2.4.0` | `2.5.0` | | [tomli](https://github.com/hukkin/tomli) | `2.0.1` | `2.0.2` | | [tqdm](https://github.com/tqdm/tqdm) | `4.66.4` | `4.66.6` | | [types-python-dateutil](https://github.com/python/typeshed) | `2.9.0.20240316` | `2.9.0.20241003` | | [tzdata](https://github.com/python/tzdata) | `2024.1` | `2024.2` | | [urllib3](https://github.com/urllib3/urllib3) | `2.2.2` | `2.2.3` | | [watchdog](https://github.com/gorakhargosh/watchdog) | `4.0.1` | `5.0.3` | | [webcolors](https://github.com/ubernostrum/webcolors) | `24.6.0` | `24.8.0` | | [zipp](https://github.com/jaraco/zipp) | `3.19.2` | `3.20.2` | Updates `linkml-runtime` from 1.7.7 to 1.8.3 - [Release notes](https://github.com/linkml/linkml-runtime/releases) - [Commits](linkml/linkml-runtime@v1.7.7...v1.8.3) Updates `prefixmaps` from 0.2.5 to 0.2.6 - [Release notes](https://github.com/linkml/prefixmaps/releases) - [Commits](linkml/prefixmaps@v0.2.5...v0.2.6) Updates `pydantic` from 2.8.2 to 2.9.2 - [Release notes](https://github.com/pydantic/pydantic/releases) - [Changelog](https://github.com/pydantic/pydantic/blob/main/HISTORY.md) - [Commits](pydantic/pydantic@v2.8.2...v2.9.2) Updates `pyyaml` from 6.0.1 to 6.0.2 - [Release notes](https://github.com/yaml/pyyaml/releases) - [Changelog](https://github.com/yaml/pyyaml/blob/main/CHANGES) - [Commits](yaml/pyyaml@6.0.1...6.0.2) Updates `linkml` from 1.7.10 to 1.8.5 - [Release notes](https://github.com/linkml/linkml/releases) - [Changelog](https://github.com/linkml/linkml/blob/main/ModelChanges.md) - [Commits](linkml/linkml@v1.7.10...v1.8.5) Updates `pytest` from 8.2.2 to 8.3.3 - [Release notes](https://github.com/pytest-dev/pytest/releases) - [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst) - [Commits](pytest-dev/pytest@8.2.2...8.3.3) Updates `attrs` from 23.2.0 to 24.2.0 - [Commits](https://github.com/sponsors/hynek/commits) Updates `bioregistry` from 0.11.10 to 0.11.21 - [Release notes](https://github.com/biopragmatics/bioregistry/releases) - [Commits](biopragmatics/bioregistry@v0.11.10...v0.11.21) Updates `cachetools` from 5.3.3 to 5.5.0 - [Changelog](https://github.com/tkem/cachetools/blob/master/CHANGELOG.rst) - [Commits](tkem/cachetools@v5.3.3...v5.5.0) Updates `certifi` from 2024.6.2 to 2024.8.30 - [Commits](certifi/python-certifi@2024.06.02...2024.08.30) Updates `charset-normalizer` from 3.3.2 to 3.4.0 - [Release notes](https://github.com/Ousret/charset_normalizer/releases) - [Changelog](https://github.com/jawah/charset_normalizer/blob/master/CHANGELOG.md) - [Commits](jawah/charset_normalizer@3.3.2...3.4.0) Updates `curies` from 0.7.9 to 0.9.0 - [Release notes](https://github.com/biopragmatics/curies/releases) - [Commits](biopragmatics/curies@v0.7.9...v0.9.0) Updates `et-xmlfile` from 1.1.0 to 2.0.0 Updates `exceptiongroup` from 1.2.1 to 1.2.2 - [Release notes](https://github.com/agronholm/exceptiongroup/releases) - [Changelog](https://github.com/agronholm/exceptiongroup/blob/main/CHANGES.rst) - [Commits](agronholm/exceptiongroup@1.2.1...1.2.2) Updates `google-api-core` from 2.19.1 to 2.22.0 - [Release notes](https://github.com/googleapis/python-api-core/releases) - [Changelog](https://github.com/googleapis/python-api-core/blob/main/CHANGELOG.md) - [Commits](googleapis/python-api-core@v2.19.1...v2.22.0) Updates `google-api-python-client` from 2.134.0 to 2.151.0 - [Release notes](https://github.com/googleapis/google-api-python-client/releases) - [Commits](googleapis/google-api-python-client@v2.134.0...v2.151.0) Updates `google-auth` from 2.30.0 to 2.35.0 - [Release notes](https://github.com/googleapis/google-auth-library-python/releases) - [Changelog](https://github.com/googleapis/google-auth-library-python/blob/main/CHANGELOG.md) - [Commits](googleapis/google-auth-library-python@v2.30.0...v2.35.0) Updates `google-auth-oauthlib` from 1.2.0 to 1.2.1 - [Release notes](https://github.com/GoogleCloudPlatform/google-auth-library-python-oauthlib/releases) - [Changelog](https://github.com/googleapis/google-auth-library-python-oauthlib/blob/main/CHANGELOG.md) - [Commits](googleapis/google-auth-library-python-oauthlib@v1.2.0...v1.2.1) Updates `googleapis-common-protos` from 1.63.2 to 1.65.0 - [Release notes](https://github.com/googleapis/python-api-common-protos/releases) - [Changelog](https://github.com/googleapis/python-api-common-protos/blob/main/CHANGELOG.md) - [Commits](googleapis/python-api-common-protos@v1.63.2...v1.65.0) Updates `greenlet` from 3.0.3 to 3.1.1 - [Changelog](https://github.com/python-greenlet/greenlet/blob/master/CHANGES.rst) - [Commits](python-greenlet/greenlet@3.0.3...3.1.1) Updates `gspread` from 6.1.2 to 6.1.4 - [Release notes](https://github.com/burnash/gspread/releases) - [Changelog](https://github.com/burnash/gspread/blob/v6.1.4/HISTORY.rst) - [Commits](burnash/gspread@v6.1.2...v6.1.4) Updates `idna` from 3.7 to 3.10 - [Release notes](https://github.com/kjd/idna/releases) - [Changelog](https://github.com/kjd/idna/blob/master/HISTORY.rst) - [Commits](kjd/idna@v3.7...v3.10) Updates `importlib-metadata` from 8.0.0 to 8.5.0 - [Release notes](https://github.com/python/importlib_metadata/releases) - [Changelog](https://github.com/python/importlib_metadata/blob/main/NEWS.rst) - [Commits](python/importlib_metadata@v8.0.0...v8.5.0) Updates `isodate` from 0.6.1 to 0.7.2 - [Changelog](https://github.com/gweis/isodate/blob/master/CHANGES.txt) - [Commits](gweis/isodate@0.6.1...0.7.2) Updates `jsonpath-ng` from 1.6.1 to 1.7.0 - [Release notes](https://github.com/h2non/jsonpath-ng/releases) - [Changelog](https://github.com/h2non/jsonpath-ng/blob/master/History.md) - [Commits](h2non/jsonpath-ng@v1.6.1...v1.7.0) Updates `jsonschema` from 4.22.0 to 4.23.0 - [Release notes](https://github.com/python-jsonschema/jsonschema/releases) - [Changelog](https://github.com/python-jsonschema/jsonschema/blob/main/CHANGELOG.rst) - [Commits](python-jsonschema/jsonschema@v4.22.0...v4.23.0) Updates `jsonschema-specifications` from 2023.12.1 to 2024.10.1 - [Release notes](https://github.com/python-jsonschema/jsonschema-specifications/releases) - [Commits](python-jsonschema/jsonschema-specifications@v2023.12.1...v2024.10.1) Updates `markdown` from 3.6 to 3.7 - [Release notes](https://github.com/Python-Markdown/markdown/releases) - [Changelog](https://github.com/Python-Markdown/markdown/blob/master/docs/changelog.md) - [Commits](Python-Markdown/markdown@3.6...3.7) Updates `markupsafe` from 2.1.5 to 3.0.2 - [Release notes](https://github.com/pallets/markupsafe/releases) - [Changelog](https://github.com/pallets/markupsafe/blob/main/CHANGES.rst) - [Commits](pallets/markupsafe@2.1.5...3.0.2) Updates `mkdocs` from 1.6.0 to 1.6.1 - [Release notes](https://github.com/mkdocs/mkdocs/releases) - [Commits](mkdocs/mkdocs@1.6.0...1.6.1) Updates `numpy` from 2.0.0 to 2.0.2 - [Release notes](https://github.com/numpy/numpy/releases) - [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst) - [Commits](numpy/numpy@v2.0.0...v2.0.2) Updates `openpyxl` from 3.1.4 to 3.1.5 Updates `pandas` from 2.2.2 to 2.2.3 - [Release notes](https://github.com/pandas-dev/pandas/releases) - [Commits](pandas-dev/pandas@v2.2.2...v2.2.3) Updates `platformdirs` from 4.2.2 to 4.3.6 - [Release notes](https://github.com/tox-dev/platformdirs/releases) - [Changelog](https://github.com/tox-dev/platformdirs/blob/main/CHANGES.rst) - [Commits](tox-dev/platformdirs@4.2.2...4.3.6) Updates `proto-plus` from 1.24.0 to 1.25.0 - [Release notes](https://github.com/googleapis/proto-plus-python/releases) - [Changelog](https://github.com/googleapis/proto-plus-python/blob/main/CHANGELOG.md) - [Commits](googleapis/proto-plus-python@v1.24.0...v1.25.0) Updates `protobuf` from 5.27.2 to 5.28.3 - [Release notes](https://github.com/protocolbuffers/protobuf/releases) - [Changelog](https://github.com/protocolbuffers/protobuf/blob/main/protobuf_release.bzl) - [Commits](protocolbuffers/protobuf@v5.27.2...v5.28.3) Updates `pyasn1` from 0.6.0 to 0.6.1 - [Release notes](https://github.com/pyasn1/pyasn1/releases) - [Changelog](https://github.com/pyasn1/pyasn1/blob/main/CHANGES.rst) - [Commits](pyasn1/pyasn1@v0.6.0...v0.6.1) Updates `pyasn1-modules` from 0.4.0 to 0.4.1 - [Release notes](https://github.com/pyasn1/pyasn1-modules/releases) - [Changelog](https://github.com/pyasn1/pyasn1-modules/blob/main/CHANGES.txt) - [Commits](pyasn1/pyasn1-modules@v0.4.0...v0.4.1) Updates `pydantic-core` from 2.20.1 to 2.23.4 - [Release notes](https://github.com/pydantic/pydantic-core/releases) - [Commits](pydantic/pydantic-core@v2.20.1...v2.23.4) Updates `pymdown-extensions` from 10.8.1 to 10.12 - [Release notes](https://github.com/facelessuser/pymdown-extensions/releases) - [Commits](facelessuser/pymdown-extensions@10.8.1...10.12) Updates `pyparsing` from 3.1.2 to 3.2.0 - [Release notes](https://github.com/pyparsing/pyparsing/releases) - [Changelog](https://github.com/pyparsing/pyparsing/blob/master/CHANGES) - [Commits](pyparsing/pyparsing@pyparsing_3.1.2...3.2.0) Updates `pystow` from 0.5.4 to 0.5.6 - [Release notes](https://github.com/cthoyt/pystow/releases) - [Commits](cthoyt/pystow@v0.5.4...v0.5.6) Updates `pytz` from 2024.1 to 2024.2 - [Release notes](https://github.com/stub42/pytz/releases) - [Commits](stub42/pytz@release_2024.1...release_2024.2) Updates `rdflib` from 7.0.0 to 7.1.1 - [Release notes](https://github.com/RDFLib/rdflib/releases) - [Changelog](https://github.com/RDFLib/rdflib/blob/main/CHANGELOG.md) - [Commits](RDFLib/rdflib@7.0.0...7.1.1) Updates `rpds-py` from 0.18.1 to 0.20.1 - [Release notes](https://github.com/crate-py/rpds/releases) - [Commits](crate-py/rpds@v0.18.1...v0.20.1) Updates `ruamel-yaml-clib` from 0.2.8 to 0.2.12 Updates `setuptools` from 70.1.1 to 75.3.0 - [Release notes](https://github.com/pypa/setuptools/releases) - [Changelog](https://github.com/pypa/setuptools/blob/main/NEWS.rst) - [Commits](pypa/setuptools@v70.1.1...v75.3.0) Updates `soupsieve` from 2.5 to 2.6 - [Release notes](https://github.com/facelessuser/soupsieve/releases) - [Commits](facelessuser/soupsieve@2.5...2.6) Updates `sqlalchemy` from 2.0.31 to 2.0.36 - [Release notes](https://github.com/sqlalchemy/sqlalchemy/releases) - [Changelog](https://github.com/sqlalchemy/sqlalchemy/blob/main/CHANGES.rst) - [Commits](https://github.com/sqlalchemy/sqlalchemy/commits) Updates `termcolor` from 2.4.0 to 2.5.0 - [Release notes](https://github.com/termcolor/termcolor/releases) - [Changelog](https://github.com/termcolor/termcolor/blob/main/CHANGES.md) - [Commits](termcolor/termcolor@2.4.0...2.5.0) Updates `tomli` from 2.0.1 to 2.0.2 - [Changelog](https://github.com/hukkin/tomli/blob/master/CHANGELOG.md) - [Commits](hukkin/tomli@2.0.1...2.0.2) Updates `tqdm` from 4.66.4 to 4.66.6 - [Release notes](https://github.com/tqdm/tqdm/releases) - [Commits](tqdm/tqdm@v4.66.4...v4.66.6) Updates `types-python-dateutil` from 2.9.0.20240316 to 2.9.0.20241003 - [Commits](https://github.com/python/typeshed/commits) Updates `tzdata` from 2024.1 to 2024.2 - [Release notes](https://github.com/python/tzdata/releases) - [Changelog](https://github.com/python/tzdata/blob/master/NEWS.md) - [Commits](python/tzdata@2024.1...2024.2) Updates `urllib3` from 2.2.2 to 2.2.3 - [Release notes](https://github.com/urllib3/urllib3/releases) - [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst) - [Commits](urllib3/urllib3@2.2.2...2.2.3) Updates `watchdog` from 4.0.1 to 5.0.3 - [Release notes](https://github.com/gorakhargosh/watchdog/releases) - [Changelog](https://github.com/gorakhargosh/watchdog/blob/master/changelog.rst) - [Commits](gorakhargosh/watchdog@v4.0.1...v5.0.3) Updates `webcolors` from 24.6.0 to 24.8.0 - [Changelog](https://github.com/ubernostrum/webcolors/blob/trunk/docs/changelog.rst) - [Commits](ubernostrum/webcolors@24.6.0...24.8.0) Updates `zipp` from 3.19.2 to 3.20.2 - [Release notes](https://github.com/jaraco/zipp/releases) - [Changelog](https://github.com/jaraco/zipp/blob/main/NEWS.rst) - [Commits](jaraco/zipp@v3.19.2...v3.20.2) --- updated-dependencies: - dependency-name: linkml-runtime dependency-type: direct:production update-type: version-update:semver-minor dependency-group: all-dependencies - dependency-name: prefixmaps dependency-type: direct:production update-type: version-update:semver-patch dependency-group: all-dependencies - dependency-name: pydantic dependency-type: direct:production update-type: version-update:semver-minor dependency-group: all-dependencies - dependency-name: pyyaml dependency-type: direct:production update-type: version-update:semver-patch dependency-group: all-dependencies - dependency-name: linkml dependency-type: direct:development update-type: version-update:semver-minor dependency-group: all-dependencies - dependency-name: pytest dependency-type: direct:development update-type: version-update:semver-minor dependency-group: all-dependencies - dependency-name: attrs dependency-type: indirect update-type: version-update:semver-major dependency-group: all-dependencies - dependency-name: bioregistry dependency-type: indirect update-type: version-update:semver-patch dependency-group: all-dependencies - dependency-name: cachetools dependency-type: indirect update-type: version-update:semver-minor dependency-group: all-dependencies - dependency-name: certifi dependency-type: indirect update-type: version-update:semver-minor dependency-group: all-dependencies - dependency-name: charset-normalizer dependency-type: indirect update-type: version-update:semver-minor dependency-group: all-dependencies - dependency-name: curies dependency-type: indirect update-type: version-update:semver-minor dependency-group: all-dependencies - dependency-name: et-xmlfile dependency-type: indirect update-type: version-update:semver-major dependency-group: all-dependencies - dependency-name: exceptiongroup dependency-type: indirect update-type: version-update:semver-patch dependency-group: all-dependencies - dependency-name: google-api-core dependency-type: indirect update-type: version-update:semver-minor dependency-group: all-dependencies - dependency-name: google-api-python-client dependency-type: indirect update-type: version-update:semver-minor dependency-group: all-dependencies - dependency-name: google-auth dependency-type: indirect update-type: version-update:semver-minor dependency-group: all-dependencies - dependency-name: google-auth-oauthlib dependency-type: indirect update-type: version-update:semver-patch dependency-group: all-dependencies - dependency-name: googleapis-common-protos dependency-type: indirect update-type: version-update:semver-minor dependency-group: all-dependencies - dependency-name: greenlet dependency-type: indirect update-type: version-update:semver-minor dependency-group: all-dependencies - dependency-name: gspread dependency-type: indirect update-type: version-update:semver-patch dependency-group: all-dependencies - dependency-name: idna dependency-type: indirect update-type: version-update:semver-minor dependency-group: all-dependencies - dependency-name: importlib-metadata dependency-type: indirect update-type: version-update:semver-minor dependency-group: all-dependencies - dependency-name: isodate dependency-type: indirect update-type: version-update:semver-minor dependency-group: all-dependencies - dependency-name: jsonpath-ng dependency-type: indirect update-type: version-update:semver-minor dependency-group: all-dependencies - dependency-name: jsonschema dependency-type: indirect update-type: version-update:semver-minor dependency-group: all-dependencies - dependency-name: jsonschema-specifications dependency-type: indirect update-type: version-update:semver-major dependency-group: all-dependencies - dependency-name: markdown dependency-type: indirect update-type: version-update:semver-minor dependency-group: all-dependencies - dependency-name: markupsafe dependency-type: indirect update-type: version-update:semver-major dependency-group: all-dependencies - dependency-name: mkdocs dependency-type: indirect update-type: version-update:semver-patch dependency-group: all-dependencies - dependency-name: numpy dependency-type: indirect update-type: version-update:semver-patch dependency-group: all-dependencies - dependency-name: openpyxl dependency-type: indirect update-type: version-update:semver-patch dependency-group: all-dependencies - dependency-name: pandas dependency-type: indirect update-type: version-update:semver-patch dependency-group: all-dependencies - dependency-name: platformdirs dependency-type: indirect update-type: version-update:semver-minor dependency-group: all-dependencies - dependency-name: proto-plus dependency-type: indirect update-type: version-update:semver-minor dependency-group: all-dependencies - dependency-name: protobuf dependency-type: indirect update-type: version-update:semver-minor dependency-group: all-dependencies - dependency-name: pyasn1 dependency-type: indirect update-type: version-update:semver-patch dependency-group: all-dependencies - dependency-name: pyasn1-modules dependency-type: indirect update-type: version-update:semver-patch dependency-group: all-dependencies - dependency-name: pydantic-core dependency-type: indirect update-type: version-update:semver-minor dependency-group: all-dependencies - dependency-name: pymdown-extensions dependency-type: indirect update-type: version-update:semver-minor dependency-group: all-dependencies - dependency-name: pyparsing dependency-type: indirect update-type: version-update:semver-minor dependency-group: all-dependencies - dependency-name: pystow dependency-type: indirect update-type: version-update:semver-patch dependency-group: all-dependencies - dependency-name: pytz dependency-type: indirect update-type: version-update:semver-minor dependency-group: all-dependencies - dependency-name: rdflib dependency-type: indirect update-type: version-update:semver-minor dependency-group: all-dependencies - dependency-name: rpds-py dependency-type: indirect update-type: version-update:semver-minor dependency-group: all-dependencies - dependency-name: ruamel-yaml-clib dependency-type: indirect update-type: version-update:semver-patch dependency-group: all-dependencies - dependency-name: setuptools dependency-type: indirect update-type: version-update:semver-major dependency-group: all-dependencies - dependency-name: soupsieve dependency-type: indirect update-type: version-update:semver-minor dependency-group: all-dependencies - dependency-name: sqlalchemy dependency-type: indirect update-type: version-update:semver-patch dependency-group: all-dependencies - dependency-name: termcolor dependency-type: indirect update-type: version-update:semver-minor dependency-group: all-dependencies - dependency-name: tomli dependency-type: indirect update-type: version-update:semver-patch dependency-group: all-dependencies - dependency-name: tqdm dependency-type: indirect update-type: version-update:semver-patch dependency-group: all-dependencies - dependency-name: types-python-dateutil dependency-type: indirect update-type: version-update:semver-patch dependency-group: all-dependencies - dependency-name: tzdata dependency-type: indirect update-type: version-update:semver-minor dependency-group: all-dependencies - dependency-name: urllib3 dependency-type: indirect update-type: version-update:semver-patch dependency-group: all-dependencies - dependency-name: watchdog dependency-type: indirect update-type: version-update:semver-major dependency-group: all-dependencies - dependency-name: webcolors dependency-type: indirect update-type: version-update:semver-minor dependency-group: all-dependencies - dependency-name: zipp dependency-type: indirect update-type: version-update:semver-minor dependency-group: all-dependencies ... 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Bumps the all-dependencies group with 58 updates:
1.7.71.8.30.2.50.2.62.8.22.9.26.0.16.0.21.7.101.8.58.2.28.3.323.2.024.2.00.11.100.11.215.3.35.5.02024.6.22024.8.303.3.23.4.00.7.90.9.01.1.02.0.01.2.11.2.22.19.12.22.02.134.02.151.02.30.02.35.01.2.01.2.11.63.21.65.03.0.33.1.16.1.26.1.43.73.108.0.08.5.00.6.10.7.21.6.11.7.04.22.04.23.02023.12.12024.10.13.63.72.1.53.0.21.6.01.6.12.0.02.0.23.1.43.1.52.2.22.2.34.2.24.3.61.24.01.25.05.27.25.28.30.6.00.6.10.4.00.4.12.20.12.23.410.8.110.123.1.23.2.00.5.40.5.62024.12024.27.0.07.1.10.18.10.20.10.2.80.2.1270.1.175.3.02.52.62.0.312.0.362.4.02.5.02.0.12.0.24.66.44.66.62.9.0.202403162.9.0.202410032024.12024.22.2.22.2.34.0.15.0.324.6.024.8.03.19.23.20.2Updates
linkml-runtimefrom 1.7.7 to 1.8.3Release notes
Sourced from linkml-runtime's releases.
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Commits
f53e0eeMerge pull request #340 from candleindark/local-loggerb183708Replace use of the root logger with use of module-level logger6ba1b0bMerge pull request #339 from sneakers-the-rat/fix-deprecation-warningse698170use model_dump not dict9fd5a3eMerge pull request #329 from sneakers-the-rat/schemaview-hashb5f2b4bcache schemaview hash3db7d7cMerge pull request #337 from linkml/nlharris-patch-25768107Merge pull request #330 from sneakers-the-rat/schemaview-relative-imports3d2acf2revert no op20ebae8no op to trigger upstream tests runningUpdates
prefixmapsfrom 0.2.5 to 0.2.6Release notes
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Commits
dea46bfMerge pull request #76 from linkml/refresh_data_202434df551prioritize pmid over pubmed for prefix resolution of ncbi pubmed identifiers ...5b38051prioritize pmid over pubmed for prefix resolution of ncbi pubmed identifiers ...6611ba4replace db-xrefs.yaml with update from GOfa7602arefresh contexts based on GO changes upstreamUpdates
pydanticfrom 2.8.2 to 2.9.2Release notes
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Changelog
Sourced from pydantic's changelog.
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Commits
7cedbfbhistory updates7eab2b8v bumpc0a288fFixZoneInfowith various invalid types (#10408)ea6115dFix variance issue in_IncExtype alias, only allowTrue(#10414)fbfe25aFix serialization schema generation when usingPlainValidator(#10427)26cff3cAdding notes on designing callable discriminators (#10400)8a0e7adDo not error when trying to evaluate annotations of private attributes (#10358)ecc5275bump2c61bfdFix evaluation of stringified annotations during namespace inspection (#10347)3d364cbUse correct types namespace when building namedtuple core schemas (#10337)Updates
pyyamlfrom 6.0.1 to 6.0.2Release notes
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Changelog
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Commits
41309b0Release 6.0.2 (#819)dd9f0e16.0.2rc1 (#809)f5527a2disable CI trigger on PR editsb4d80a7Python 3.12 + musllinux_1_1_x86_64 wheel supportUpdates
linkmlfrom 1.7.10 to 1.8.5Release notes
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Commits
cad5933feat(graphql): add support for enumerations (#2303)f01fdfaMerge pull request #2347 from linkml/support-test-speedup8058871Merge pull request #2329 from linkml/fix-22848d5363bMerge pull request #2281 from sneakers-the-rat/fix-ifabsent-custom-types33fea35Update linkml/generators/common/ifabsent_processor.py5e32a2a[pythongen] permissible value sufficeifabsent0eaad81[tests] fixes according pr review commentsf11ab8c[pythongen] simplify code44b4985[tests] improve coverage of new functionalityef54632[pydanticgen] fix imports generationUpdates
pytestfrom 8.2.2 to 8.3.3Release notes
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Commits
d0f136fbuild(deps): Bump pypa/gh-action-pypi-publish from 1.10.0 to 1.10.1 (#12790)972f307Prepare release version 8.3.30dabdcfInclude co-authors in release announcement (#12795) (#12797)a9910a4Do not discover properties when iterating fixtures (#12781) (#12788)0f10b6bFix issue with slashes being turned into backslashes on Windows (#12760) (#12...300d13dMerge pull request #12785 from pytest-dev/patchback/backports/8.3.x/57cccf7f4...e5d32c7Merge pull request #12784 from svenevs/fix/docs-example-parametrize-minor-typobc913d1Streamline checks for verbose option (#12706) (#12778)01cfcc9Fix typos and introduce codespell pre-commit hook (#12769) (#12774)4873394doc: Remove past training (#12772) (#12773)Updates
attrsfrom 23.2.0 to 24.2.0Commits
Updates
bioregistryfrom 0.11.10 to 0.11.21Release notes
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Commits
56e8b93Bump version: 0.11.21-dev → 0.11.218987fa6📮 Automatically update7c5b9c3Add pandas as web dependency (#1235)9310403Add prefix:asteraceaegd.plantandasteraceaegd.genome(#1214)a629816Update paper_ranking.yml (#1233)e12513e🫀Health Report61e60cdBump version: 0.11.20 → 0.11.21-devb2f12d9Bump version: 0.11.20-dev → 0.11.2014b20bf📮 Automatically update98fcdb6Add curations to semi-automated literature workflow (#1223)Updates
cachetoolsfrom 5.3.3 to 5.5.0Changelog
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Commits
6c78a8fBump version.8841efdRelease v5.5.0.f2ccacaFormat tests with black.237ad80Fix #278: Improve TLRUCache docs.e960781Fix #302: Improve cachetools.keys unit tests.ea158fcBump actions/setup-python from 5.1.0 to 5.1.18a38dafUpdate expire docs.7be40f0TLRUCache.expire() returns iterable of expired (key, value) pairs.c22fc7dFix #292, fix #205, fix #103: TTLCache.expire() returns iterable of expired (...990665bRelease v5.4.0.Updates
certififrom 2024.6.2 to 2024.8.30Commits
325c2fd2024.08.30 (#304)d66bf5fBump actions/upload-artifact from 4.3.5 to 4.3.6 (#302)2150f23Bump actions/upload-artifact from 4.3.4 to 4.3.5 (#301)fc9b771Bump actions/setup-python from 5.1.0 to 5.1.1 (#300)965b239Bump actions/download-artifact from 4.1.7 to 4.1.8 (#297)c1f50ccBump actions/upload-artifact from 4.3.3 to 4.3.4 (#296)bd815382024.07.04 (#295)06a2cbfBump peter-evans/create-pull-request from 6.0.5 to 6.1.0 (#294)13bba02Bump actions/checkout from 4.1.6 to 4.1.7 (#293)e8abcd0Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.9.0 (#292)Updates
charset-normalizerfrom 3.3.2 to 3.4.0Release notes
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