Seeking efficient and scalable method for systematic annotation of genes to direct GO terms and their hierarchical parents #443
Unanswered
alimotahharynia
asked this question in
Q&A
Replies: 0 comments
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
-
How can I systematically annotate each gene in Homo sapiens taxon to its direct Gene Ontology (GO) term and all its parent terms in a hierarchical manner? While I am aware that the obo file contains information such as "is a," "part of," and "regulates," it lacks a comprehensive hierarchy from child GO terms to all their parent terms. Is there an existing method available to achieve this systematic annotation, or do I need to develop a custom script to extract this information from the obo file? Any guidance or assistance regarding this issue would be greatly appreciated.
Kind regards,
Ali
Beta Was this translation helpful? Give feedback.
All reactions