Skip to content

Files

Latest commit

8421270 · Jul 31, 2023

History

History
47 lines (29 loc) · 1.54 KB

COSMIC_db_v89.md

File metadata and controls

47 lines (29 loc) · 1.54 KB

COSMIC

For annovar db use

GRCh38/cosmic/v89/

COSMIC mutation data

Download:

Coding and Non-conding mutations

Download:

prepare_annovar_user.pl -dbtype cosmic CosmicMutantExport.tsv -vcf CosmicCodingMuts.vcf > hg38_cosmic89_coding.txt
prepare_annovar_user.pl -dbtype cosmic CosmicNCV.tsv -vcf CosmicNonCodingVariants.vcf > hg38_cosmic89_noncoding.txt

GRCh37/cosmic/v89/

COSMIC mutation data

Download:

Coding and Non-conding mutations

Download:

prepare_annovar_user.pl -dbtype cosmic CosmicMutantExport.tsv -vcf CosmicCodingMuts.vcf > hg19_cosmic89_coding.txt
prepare_annovar_user.pl -dbtype cosmic CosmicNCV.tsv -vcf CosmicNonCodingVariants.vcf > hg19_cosmic89_noncoding.txt