From 3b0ba31ef23aef99e57f49ed5c14ac74193138ea Mon Sep 17 00:00:00 2001 From: Jeren Browning Date: Tue, 26 Sep 2023 14:57:47 -0600 Subject: [PATCH 01/16] Add cypher query capability --- .env-sample | 2 + NodeLibraries/deeplynx/.config.yml | 3 + NodeLibraries/deeplynx/index.d.ts | 2 +- NodeLibraries/deeplynx/package.json | 2 +- NodeLibraries/deeplynx/src/errors.rs | 1 - NodeLibraries/deeplynx/src/redis_graph.rs | 6 +- .../deeplynx/src/redis_graph/loader.rs | 125 ++- .../deeplynx/src/redis_graph/redis_tests.rs | 2 +- NodeLibraries/deeplynx/src/timeseries.rs | 1 - .../deeplynx/src/timeseries/ingestion.rs | 1 - .../deeplynx/src/timeseries/repository.rs | 10 - .../src/timeseries/timeseries_errors.rs | 3 +- NodeLibraries/deeplynx/yarn.lock | 898 +++++++++++++++++ docker-compose.yml | 2 +- .../ontology/container_respository.ts | 12 +- .../data_warehouse/data/graph_routes.ts | 23 + src/services/cache/redis_graph_loader.ts | 103 +- src/services/config.ts | 6 + src/tests/.env-sample | 2 + yarn.lock | 946 ++++++++---------- 20 files changed, 1578 insertions(+), 572 deletions(-) create mode 100644 NodeLibraries/deeplynx/.config.yml create mode 100644 NodeLibraries/deeplynx/yarn.lock diff --git a/.env-sample b/.env-sample index 64d4c94c2..975f32677 100644 --- a/.env-sample +++ b/.env-sample @@ -21,6 +21,8 @@ CACHE_PROVIDER=memory CACHE_DEFAULT_TTL=21600 # redis connection string - e.g redis://user:password@redis-service.com:6379/ CACHE_REDIS_CONNECTION_STRING= +# redis graph expiry timer in seconds +REDIS_GRAPH_TTL=3600 CACHE_GRAPHQL=true diff --git a/NodeLibraries/deeplynx/.config.yml b/NodeLibraries/deeplynx/.config.yml new file mode 100644 index 000000000..0912c0aa9 --- /dev/null +++ b/NodeLibraries/deeplynx/.config.yml @@ -0,0 +1,3 @@ +db_connection_string: postgresql://postgres:deeplynxcore@localhost/deep_lynx +redis_connection_string: redis://localhost:6379 +max_columns: \ No newline at end of file diff --git a/NodeLibraries/deeplynx/index.d.ts b/NodeLibraries/deeplynx/index.d.ts index 354206309..d0a2f6374 100644 --- a/NodeLibraries/deeplynx/index.d.ts +++ b/NodeLibraries/deeplynx/index.d.ts @@ -56,5 +56,5 @@ export class RedisGraphLoader { * This function should be called before any work done on the object */ init(config: Configuration): Promise - generateRedisGraph(containerId: string, timestamp?: string | undefined | null): Promise + generateRedisGraph(containerId: string, timestamp?: string | undefined | null, ttl?: number | undefined | null): Promise } diff --git a/NodeLibraries/deeplynx/package.json b/NodeLibraries/deeplynx/package.json index 4f0bb3fe6..2e1f1e069 100644 --- a/NodeLibraries/deeplynx/package.json +++ b/NodeLibraries/deeplynx/package.json @@ -27,4 +27,4 @@ "universal": "napi universal", "version": "napi version" } -} +} \ No newline at end of file diff --git a/NodeLibraries/deeplynx/src/errors.rs b/NodeLibraries/deeplynx/src/errors.rs index dffba4d1a..e77393cb0 100644 --- a/NodeLibraries/deeplynx/src/errors.rs +++ b/NodeLibraries/deeplynx/src/errors.rs @@ -1,6 +1,5 @@ use napi::Error; use std::io; -use std::num::ParseIntError; use thiserror::Error; use crate::redis_graph::redis_errors::RedisLoaderError; diff --git a/NodeLibraries/deeplynx/src/redis_graph.rs b/NodeLibraries/deeplynx/src/redis_graph.rs index 144b6c841..8255edc4e 100644 --- a/NodeLibraries/deeplynx/src/redis_graph.rs +++ b/NodeLibraries/deeplynx/src/redis_graph.rs @@ -37,7 +37,8 @@ impl JsRedisGraphLoader { &self, container_id: String, timestamp: Option, - ) -> Result<(), napi::Error> { + ttl: Option, + ) -> Result { let inner = self.inner.clone().ok_or(napi::Error::new( napi::Status::GenericFailure, "must call init before calling functions", @@ -50,10 +51,11 @@ impl JsRedisGraphLoader { .parse::() .map_err(|e| napi::Error::new(napi::Status::GenericFailure, e.to_string()))?, timestamp, + ttl, ) // to u64 is a safe cast because container_id isn't negative .await { - Ok(_) => Ok(()), + Ok(key) => Ok(key), Err(e) => Err(napi::Error::new( napi::Status::GenericFailure, e.to_string(), diff --git a/NodeLibraries/deeplynx/src/redis_graph/loader.rs b/NodeLibraries/deeplynx/src/redis_graph/loader.rs index 2355f2840..c4c2ea9a1 100644 --- a/NodeLibraries/deeplynx/src/redis_graph/loader.rs +++ b/NodeLibraries/deeplynx/src/redis_graph/loader.rs @@ -48,8 +48,13 @@ impl RedisGraphLoader { &self, container_id: u64, timestamp: Option, - ) -> Result<(), RedisLoaderError> { + ttl: Option, + ) -> Result { let mut connection = self.db.acquire().await?; + + let key: String = format!("{}-{}", container_id, timestamp.clone().unwrap_or("default".to_string())); + self.verify_redis_key(key.clone()).await?; + let stream = connection .copy_out_raw( format!( @@ -143,9 +148,8 @@ TO STDOUT WITH (FORMAT csv, HEADER true) ; if (current_size + properties.as_slice().len()) > 496 * 1_000_000 { self .transmit_to_redis( + key.clone(), ¤t_buffer, - container_id, - timestamp.clone().unwrap_or("default".to_string()), (node_count, metatype_name_header.len() as u64), (0, 0), has_txed, @@ -173,9 +177,8 @@ TO STDOUT WITH (FORMAT csv, HEADER true) ; // track of multiple buffers. TODO: benchmark additional requests against potentially just one self .transmit_to_redis( + key.clone(), ¤t_buffer, - container_id, - timestamp.clone().unwrap_or("default".to_string()), (node_count, metatype_name_header.len() as u64), (0, 0), has_txed, @@ -286,9 +289,8 @@ TO STDOUT WITH (FORMAT csv, HEADER true);"# if (current_size + properties.as_slice().len() + 16) > 496 * 1_000_000 { self .transmit_to_redis( + key.clone(), ¤t_buffer, - container_id, - timestamp.clone().unwrap_or("default".to_string()), (0, 0), (edge_count, relationship_name_header.len() as u64), has_txed, @@ -331,23 +333,42 @@ TO STDOUT WITH (FORMAT csv, HEADER true);"# // track of multiple buffers. TODO: benchmark additional requests against potentially just one self .transmit_to_redis( + key.clone(), ¤t_buffer, - container_id, - timestamp.clone().unwrap_or("default".to_string()), (0, 0), (edge_count, relationship_name_header.len() as u64), has_txed, ) .await?; + self.set_key_expiry(key.clone(),ttl).await?; + + Ok(key.clone()) + } + + async fn verify_redis_key(&self, key: String) -> Result<(), RedisLoaderError> { + // check if the key (graph) already exists, and remove if found + let mut async_conn = self.redis_client.get_async_connection().await?; + + let key_exists:i32 = redis::cmd("EXISTS") + .arg(key.clone()) + .query_async(&mut async_conn) + .await?; + + if key_exists == 1 { + redis::cmd("DEL") + .arg(key.clone()) + .query_async(&mut async_conn) + .await?; + } + Ok(()) } async fn transmit_to_redis( &self, + key: String, payload: &Vec>, - container_id: u64, - timestamp: String, // we're doing tuples to stress the relationship between the labels and nodes (it also looks cool) nodes_labels: (u64, u64), edges_types: (u64, u64), @@ -358,7 +379,7 @@ TO STDOUT WITH (FORMAT csv, HEADER true);"# // BEGIN starts a new graph if the key doesn't exist, if it does - then we ignore this and add if !has_txed { redis::cmd("GRAPH.BULK") - .arg(format!("{}-{}", container_id, timestamp)) + .arg(key) .arg("BEGIN") .arg(nodes_labels.0) .arg(edges_types.0) @@ -369,7 +390,7 @@ TO STDOUT WITH (FORMAT csv, HEADER true);"# .await?; } else { redis::cmd("GRAPH.BULK") - .arg(format!("{}-{}", container_id, timestamp)) + .arg(key) .arg(nodes_labels.0) .arg(edges_types.0) .arg(nodes_labels.1) @@ -381,6 +402,25 @@ TO STDOUT WITH (FORMAT csv, HEADER true);"# Ok(()) } + + async fn set_key_expiry( + &self, + key: String, + ttl: Option, + ) -> Result<(), RedisLoaderError> { + let mut async_conn = self.redis_client.get_async_connection().await?; + + // use provided ttl or else default + let graph_ttl = ttl.unwrap_or(3600); + + redis::cmd("EXPIRE") + .arg(key) + .arg(graph_ttl) + .query_async(&mut async_conn) + .await?; + + Ok(()) + } } #[derive(Deserialize, Serialize, Debug)] @@ -402,12 +442,16 @@ struct Node { modified_by: String, modified_at: String, metatype_name: String, + import_data_id: Option, + type_mapping_transformation_id: Option, + data_staging_id: String, // uuid + metadata: String } impl Node { // returns parsed header and an index of property names to make sure order stays the same pub fn to_redis_header_bytes(&self, metatype_properties: Vec) -> (Vec, Vec) { - let property_len: u32 = metatype_properties.len() as u32 + 9; + let property_len: u32 = metatype_properties.len() as u32 + 15; // integer should correspond to number of properties added below let mut property_names: Vec = vec![]; let mut property_names_raw: Vec = vec![]; @@ -415,11 +459,17 @@ impl Node { property_names.extend("_data_source_id\0".as_bytes()); property_names.extend("_container_id\0".as_bytes()); property_names.extend("_original_data_id\0".as_bytes()); + property_names.extend("_metatype_id\0".as_bytes()); + property_names.extend("_metatype_name\0".as_bytes()); property_names.extend("_metadata_properties\0".as_bytes()); property_names.extend("_created_at\0".as_bytes()); property_names.extend("_created_by\0".as_bytes()); property_names.extend("_modified_at\0".as_bytes()); property_names.extend("_modified_by\0".as_bytes()); + property_names.extend("_import_data_id\0".as_bytes()); + property_names.extend("_type_mapping_transformation_id\0".as_bytes()); + property_names.extend("_data_staging_id\0".as_bytes()); + property_names.extend("_metadata\0".as_bytes()); for key in metatype_properties.iter() { let name = key.as_bytes(); @@ -447,9 +497,13 @@ impl Node { let mut property_final: Vec = vec![]; + // order of properties must match header definition in to_redis_header_bytes + // strings must be null terminated + // numbers that could be null should be checked and 0_i8 pushed if null property_final.extend(4_i8.to_ne_bytes()); property_final.extend(self.id.to_ne_bytes()); + // add null check here property_final.extend(4_i8.to_ne_bytes()); property_final.extend(self.data_source_id.to_ne_bytes()); @@ -460,6 +514,13 @@ impl Node { property_final.extend(self.original_data_id.as_bytes()); property_final.extend("\0".as_bytes()); + property_final.extend(4_i8.to_ne_bytes()); + property_final.extend(self.metatype_id.to_ne_bytes()); + + property_final.extend(3_i8.to_ne_bytes()); + property_final.extend(self.metatype_name.as_bytes()); + property_final.extend("\0".as_bytes()); + property_final.extend(3_i8.to_ne_bytes()); property_final.extend(self.metadata_properties.as_bytes()); property_final.extend("\0".as_bytes()); @@ -480,6 +541,30 @@ impl Node { property_final.extend(self.modified_by.as_bytes()); property_final.extend("\0".as_bytes()); + match self.import_data_id.clone() { + None => property_final.extend(0_i8.to_ne_bytes()), + Some(value) => { + property_final.extend(4_i8.to_ne_bytes()); + property_final.extend(self.import_data_id.unwrap().to_ne_bytes()); + } + } + + match self.type_mapping_transformation_id.clone() { + None => property_final.extend(0_i8.to_ne_bytes()), + Some(value) => { + property_final.extend(4_i8.to_ne_bytes()); + property_final.extend(self.type_mapping_transformation_id.unwrap().to_ne_bytes()); + } + } + + property_final.extend(3_i8.to_ne_bytes()); + property_final.extend(self.data_staging_id.as_bytes()); + property_final.extend("\0".as_bytes()); + + property_final.extend(3_i8.to_ne_bytes()); + property_final.extend(self.metadata.as_bytes()); + property_final.extend("\0".as_bytes()); + for property_name in index_names { match properties.get(property_name.as_str()) { @@ -697,11 +782,21 @@ pub async fn fetch_possible_metatype_relationship_properties( container_id: u64, connection: &Pool, ) -> Result, RedisLoaderError> { - let mut rows = sqlx::query("SELECT DISTINCT property_name FROM metatype_relationship_keys WHERE container_id = $1 AND metatype_name = $2") + let mut rows = sqlx::query("SELECT DISTINCT relationship_id FROM metatype_full_relationship_pairs WHERE container_id = $1 AND relationship_name = $2") .bind(container_id as i64) .bind(metatype_relationship_name) .fetch(connection); + let mut metatype_relationship_id: i64 = 0; + while let Some(row) = rows.try_next().await? { + metatype_relationship_id = row.try_get("relationship_id")?; + } + + let mut rows = sqlx::query("SELECT DISTINCT property_name FROM metatype_relationship_keys WHERE container_id = $1 AND metatype_relationship_id = $2") + .bind(container_id.clone() as i64) + .bind(metatype_relationship_id) + .fetch(connection); + let mut results = vec![]; while let Some(row) = rows.try_next().await? { // map the row into a user-defined domain type diff --git a/NodeLibraries/deeplynx/src/redis_graph/redis_tests.rs b/NodeLibraries/deeplynx/src/redis_graph/redis_tests.rs index fc124a501..b33365288 100644 --- a/NodeLibraries/deeplynx/src/redis_graph/redis_tests.rs +++ b/NodeLibraries/deeplynx/src/redis_graph/redis_tests.rs @@ -12,7 +12,7 @@ mod main_tests { // TODO: make sure you change this for an existing DeepLynx container in the db // no way I was going to try and recreate a graph simply for this test - redis_loader.generate_redis_graph(45, None).await?; + redis_loader.generate_redis_graph(1297, None, None).await?; Ok(()) } diff --git a/NodeLibraries/deeplynx/src/timeseries.rs b/NodeLibraries/deeplynx/src/timeseries.rs index 325fd17ac..a25695a22 100644 --- a/NodeLibraries/deeplynx/src/timeseries.rs +++ b/NodeLibraries/deeplynx/src/timeseries.rs @@ -7,7 +7,6 @@ mod timeseries_tests; use crate::config::Configuration; use crate::timeseries::repository::{BucketRepository, LegacyTimeseriesColumn}; use napi::bindgen_prelude::Buffer; -use serde::{Deserialize, Serialize}; #[napi(js_name = "BucketRepository")] pub struct JsBucketRepository { diff --git a/NodeLibraries/deeplynx/src/timeseries/ingestion.rs b/NodeLibraries/deeplynx/src/timeseries/ingestion.rs index bd9fdd7a0..5c274c983 100644 --- a/NodeLibraries/deeplynx/src/timeseries/ingestion.rs +++ b/NodeLibraries/deeplynx/src/timeseries/ingestion.rs @@ -2,7 +2,6 @@ use crate::timeseries::data_types::LegacyDataTypes; use crate::timeseries::repository::LegacyTimeseriesColumn; use crate::timeseries::timeseries_errors::{TimeseriesError, ValidationError}; use chrono::NaiveDateTime; -use futures::StreamExt; use sqlx::{Pool, Postgres}; use std::io::Read; diff --git a/NodeLibraries/deeplynx/src/timeseries/repository.rs b/NodeLibraries/deeplynx/src/timeseries/repository.rs index 41231a62d..05cd45947 100644 --- a/NodeLibraries/deeplynx/src/timeseries/repository.rs +++ b/NodeLibraries/deeplynx/src/timeseries/repository.rs @@ -2,20 +2,10 @@ use crate::config::Configuration; use crate::timeseries::data_types::LegacyDataTypes; use crate::timeseries::ingestion; use crate::timeseries::timeseries_errors::TimeseriesError; -use chrono::NaiveDateTime; -use rand::distributions::Alphanumeric; -use rand::Rng; -use serde::{Deserialize, Serialize}; -use serde_json::json; use sqlx::postgres::PgPool; -use sqlx::types::Json; -use sqlx::{Executor, Postgres, Transaction}; -use std::collections::HashMap; use std::io::Read; use std::sync::Arc; use tokio::sync::mpsc::error::TryRecvError; -use uuid::Uuid; -use validator::{HasLen, Validate}; #[derive(Clone, Debug)] #[napi(object)] diff --git a/NodeLibraries/deeplynx/src/timeseries/timeseries_errors.rs b/NodeLibraries/deeplynx/src/timeseries/timeseries_errors.rs index 6526e6768..cf8f09a5d 100644 --- a/NodeLibraries/deeplynx/src/timeseries/timeseries_errors.rs +++ b/NodeLibraries/deeplynx/src/timeseries/timeseries_errors.rs @@ -1,5 +1,4 @@ use napi::Error; -use std::io; use thiserror::Error; #[derive(Error, Debug)] @@ -54,4 +53,6 @@ pub enum TestError { SqlXMigration(#[from] sqlx::migrate::MigrateError), #[error("system IO error: {0}")] IO(#[from] std::io::Error), + #[error("unwrap error {0}")] + Unwrap(String), } diff --git a/NodeLibraries/deeplynx/yarn.lock b/NodeLibraries/deeplynx/yarn.lock new file mode 100644 index 000000000..6a4172266 --- /dev/null +++ b/NodeLibraries/deeplynx/yarn.lock @@ -0,0 +1,898 @@ +# THIS IS AN AUTOGENERATED FILE. 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string-width "^4.2.3" + y18n "^5.0.5" + yargs-parser "^21.1.1" + +yocto-queue@^1.0.0: + version "1.0.0" + resolved "https://registry.yarnpkg.com/yocto-queue/-/yocto-queue-1.0.0.tgz#7f816433fb2cbc511ec8bf7d263c3b58a1a3c251" + integrity sha512-9bnSc/HEW2uRy67wc+T8UwauLuPJVn28jb+GtJY16iiKWyvmYJRXVT4UamsAEGQfPohgr2q4Tq0sQbQlxTfi1g== diff --git a/docker-compose.yml b/docker-compose.yml index a21f96b59..616678ecd 100644 --- a/docker-compose.yml +++ b/docker-compose.yml @@ -17,7 +17,7 @@ services: ports: - "5432:5432" redis: - image: "redis/redis-stack:latest" + image: "redis/redis-stack:6.2.6-v9" ports: - "6379:6379" - "8001:8001" diff --git a/src/data_access_layer/repositories/data_warehouse/ontology/container_respository.ts b/src/data_access_layer/repositories/data_warehouse/ontology/container_respository.ts index 30f1f4d8d..1b2f5397d 100644 --- a/src/data_access_layer/repositories/data_warehouse/ontology/container_respository.ts +++ b/src/data_access_layer/repositories/data_warehouse/ontology/container_respository.ts @@ -30,8 +30,7 @@ import MetatypeRelationshipKeyRepository from './metatype_relationship_key_repos import MetatypeRelationshipPairRepository from './metatype_relationship_pair_repository'; import MetatypeRelationshipPair from '../../../../domain_objects/data_warehouse/ontology/metatype_relationship_pair'; import TypeMappingRepository from '../etl/type_mapping_repository'; -import KeyPairMapper from '../../../mappers/access_management/keypair_mapper'; -import RedisGraphLoaderService from '../../../../services/cache/redis_graph_loader'; +import RedisGraphService from '../../../../services/cache/redis_graph_loader'; /* ContainerRepository contains methods for persisting and retrieving a container @@ -239,16 +238,15 @@ export default class ContainerRepository implements RepositoryInterface> { - const loader = await RedisGraphLoaderService.GetInstance(); + async loadIntoRedis(id: string): Promise> { + const loader = await RedisGraphService.GetInstance(); try { - await loader.loadGraph(id); + const key = await loader.loadGraph(id); + return Promise.resolve(Result.Success(key)); } catch (e: any) { return Promise.resolve(Result.Failure(e.toString())); } - - return Promise.resolve(Result.Success(true)); } async createAlert(alert: ContainerAlert, user?: User): Promise> { diff --git a/src/http_server/routes/data_warehouse/data/graph_routes.ts b/src/http_server/routes/data_warehouse/data/graph_routes.ts index 1ba42bce8..97843fc72 100644 --- a/src/http_server/routes/data_warehouse/data/graph_routes.ts +++ b/src/http_server/routes/data_warehouse/data/graph_routes.ts @@ -17,6 +17,7 @@ import WebGLFunctions from './graph_functions/webgl_functions'; import Config from '../../../../services/config'; import Result from '../../../../common_classes/result'; import ContainerRepository from '../../../../data_access_layer/repositories/data_warehouse/ontology/container_respository'; +import RedisGraphService from '../../../../services/cache/redis_graph_loader'; export default class GraphRoutes { public static mount(app: Application, middleware: any[]) { @@ -166,6 +167,7 @@ export default class GraphRoutes { ); app.get('/containers/:containerID/graphs/webgl', ...middleware, authInContainer('read', 'data'), WebGLFunctions.listWebglFilesAndTags); app.post('/containers/:containerID/graphs/load', ...middleware, authInContainer('read', 'data'), loadRedisGraph); + app.post('/containers/:containerID/graphs/query', ...middleware, authInContainer('read', 'data'), queryRedisGraph); app.put('/containers/:containerID/graphs/webgl/files/:fileID', ...middleware, authInContainer('write', 'data'), WebGLFunctions.updateWebglFiles); app.delete('/containers/:containerID/graphs/webgl/files/:fileID', ...middleware, authInContainer('write', 'data'), FileFunctions.deleteFile); } @@ -186,3 +188,24 @@ function loadRedisGraph(req: Request, res: Response, next: NextFunction) { next(); } } + +function queryRedisGraph(req: Request, res: Response, next: NextFunction) { + if (req.container) { + let timestamp; + if (typeof req.query.timestamp !== 'undefined' && (req.query.timestamp as string) !== '') { + timestamp = req.query.timestamp.toString(); + } + + const redisGraph = new RedisGraphService(); + redisGraph + .queryGraph(req.container?.id!, {query: req.body.query, variables: req.body.variables}, timestamp) + .then((result) => { + result.asResponse(res); + }) + .catch((e) => Result.Error(e).asResponse(res)) + .finally(() => next()); + } else { + Result.Failure('container not found', 404).asResponse(res); + next(); + } +} diff --git a/src/services/cache/redis_graph_loader.ts b/src/services/cache/redis_graph_loader.ts index 2063bc4cc..7a827be55 100644 --- a/src/services/cache/redis_graph_loader.ts +++ b/src/services/cache/redis_graph_loader.ts @@ -1,11 +1,19 @@ import Config from '../config'; import {RedisGraphLoader} from 'deeplynx'; +import Result from '../../common_classes/result'; +import {Redis} from 'ioredis'; +import {Query} from '../../graphql/schema'; -export default class RedisGraphLoaderService { +// eslint-disable-next-line @typescript-eslint/ban-ts-comment +// @ts-ignore +import {RedisStatic} from 'ioredis'; + +export default class RedisGraphService { private loader: RedisGraphLoader; + private _redis: Redis; - public static GetInstance(): Promise { - const instance = new RedisGraphLoaderService(); + public static GetInstance(): Promise { + const instance = new RedisGraphService(); return new Promise((resolve, reject) => { instance .init(Config.core_db_connection_string, Config.redis_connection_string) @@ -24,9 +32,94 @@ export default class RedisGraphLoaderService { constructor() { this.loader = new RedisGraphLoader(); + this._redis = new Redis(Config.redis_connection_string); + this.setQueryTransformer(); + } + + setQueryTransformer() { + Redis.Command.setReplyTransformer('GRAPH.RO_QUERY', (result) => { + const metaInformation = this.parseMetaInformation(result.pop()); + + let parsedResults: any[] = []; + + if (result.length > 1) { + // if there are results to parse + const columnHeaders = result[0]; + const resultSet = result[1]; + + parsedResults = resultSet.map((result: any) => { + return this.parseResult(columnHeaders, result); + }); + } + + return parsedResults; + }); } - loadGraph(containerID: string, timestamp?: string): Promise { - return this.loader.generateRedisGraph(containerID, timestamp); + parseMetaInformation(array: any[]): any { + const meta: any = {}; + for (const prop of array) { + let [name, value] = prop.split(': '); + if (value) { + value = value.trim(); + name = name; + meta[name] = value; + } + } + return meta; + } + + parseResult(columnHeaders: string[], singleResult: any): any { + const columns = columnHeaders.map((columnHeader: string, index: number) => { + const name = columnHeader; + let value = singleResult[index]; + + if (Array.isArray(value)) { + value = Object.fromEntries(value); + } + + if (value.labels && value.labels.length === 1) { + value.labels = value.labels[0]; + } + + if (value.properties && Array.isArray(value.properties)) { + value.properties = Object.fromEntries(value.properties); + } + + try { + return [name, JSON.parse(value)]; + } catch (error) { + return [name, value]; + } + }); + + return Object.fromEntries(columns); + } + + loadGraph(containerID: string, timestamp?: string, ttl?: number): Promise { + return this.loader.generateRedisGraph(containerID, timestamp, ttl); + } + + async queryGraph(containerID: string, query: Query, timestamp?: string): Promise> { + const keyTimestamp = timestamp || 'default'; + let key = `${containerID}-${keyTimestamp}`; + + await this._redis + .exists(key) + .then(async (result) => { + if (result === 0) { + // graph for this container and timestamp combination has not been created, create it + const loader = await RedisGraphService.GetInstance(); + key = await loader.loadGraph(containerID, timestamp); + } + }) + .catch((e) => console.log(e)); + + try { + const result = await this._redis.call('GRAPH.RO_QUERY', key, query.query); + return Promise.resolve(Result.Success(result)); + } catch (e: any) { + return Promise.resolve(Result.Failure(e.toString())); + } } } diff --git a/src/services/config.ts b/src/services/config.ts index bba902b5d..611d7fd4e 100644 --- a/src/services/config.ts +++ b/src/services/config.ts @@ -32,6 +32,7 @@ export class Config { private readonly _cache_provider: string; private readonly _cache_default_ttl: number; private readonly _cache_redis_connection_string: string; + private readonly _redis_graph_ttl: number; private readonly _initial_import_cache_ttl: number; private readonly _import_cache_ttl: number; private readonly _log_db: boolean; @@ -160,6 +161,7 @@ export class Config { // default to 6 hours for the initial import cache, subsequent should be 30 seconds this._initial_import_cache_ttl = process.env.INITIAL_IMPORT_CACHE_TTL ? parseInt(process.env.INITIAL_IMPORT_CACHE_TTL!, 10) : 21600; this._import_cache_ttl = process.env.IMPORT_CACHE_TTL ? parseInt(process.env.IMPORT_CACHE_TTL!, 10) : 300; + this._redis_graph_ttl = process.env.REDIS_GRAPH_TTL ? parseInt(process.env.REDIS_GRAPH_TTL!, 10) : 3600; this._core_db_connection_string = process.env.CORE_DB_CONNECTION_STRING || ''; this._timescaledb_enabled = process.env.TIMESCALEDB_ENABLED === 'true'; @@ -359,6 +361,10 @@ export class Config { return this._cache_redis_connection_string; } + get redis_graph_ttl(): number { + return this._redis_graph_ttl; + } + get server_port(): string { return this._server_port; } diff --git a/src/tests/.env-sample b/src/tests/.env-sample index 2189c1ab2..00983b419 100644 --- a/src/tests/.env-sample +++ b/src/tests/.env-sample @@ -35,6 +35,8 @@ CACHE_PROVIDER=memory CACHE_DEFAULT_TTL=21600 # redis connection string - e.g redis://user:password@redis-service.com:6379/ CACHE_REDIS_CONNECTION_STRING= +# redis graph expiry timer in seconds +REDIS_GRAPH_TTL=3600 # debug,info,warn,error,silent LOG_LEVEL=debug diff --git a/yarn.lock b/yarn.lock index 5e4c6bce4..a92886b0d 100644 --- a/yarn.lock +++ b/yarn.lock @@ -123,13 +123,6 @@ https-proxy-agent "^5.0.0" tslib "^2.2.0" -"@azure/core-tracing@^1.0.0", "@azure/core-tracing@^1.0.1": - version "1.0.1" - resolved "https://registry.npmjs.org/@azure/core-tracing/-/core-tracing-1.0.1.tgz" - integrity sha512-I5CGMoLtX+pI17ZdiFJZgxMJApsK6jjfm85hpgp3oazCdq5Wxgh4wMr7ge/TTWW1B5WBuvIOI1fMU/FrOAMKrw== - dependencies: - tslib "^2.2.0" - "@azure/core-tracing@1.0.0-preview.13": version "1.0.0-preview.13" resolved "https://registry.npmjs.org/@azure/core-tracing/-/core-tracing-1.0.0-preview.13.tgz" @@ -138,6 +131,13 @@ "@opentelemetry/api" "^1.0.1" tslib "^2.2.0" +"@azure/core-tracing@^1.0.0", "@azure/core-tracing@^1.0.1": + version "1.0.1" + resolved "https://registry.npmjs.org/@azure/core-tracing/-/core-tracing-1.0.1.tgz" + integrity sha512-I5CGMoLtX+pI17ZdiFJZgxMJApsK6jjfm85hpgp3oazCdq5Wxgh4wMr7ge/TTWW1B5WBuvIOI1fMU/FrOAMKrw== + dependencies: + tslib "^2.2.0" + "@azure/core-util@^1.0.0", "@azure/core-util@^1.1.0", "@azure/core-util@^1.1.1", "@azure/core-util@^1.2.0", "@azure/core-util@^1.3.0": version "1.4.0" resolved "https://registry.npmjs.org/@azure/core-util/-/core-util-1.4.0.tgz" @@ -199,6 +199,13 @@ events "^3.0.0" tslib "^2.2.0" +"@babel/code-frame@7.12.11": + version "7.12.11" + resolved "https://registry.npmjs.org/@babel/code-frame/-/code-frame-7.12.11.tgz" + integrity sha512-Zt1yodBx1UcyiePMSkWnU4hPqhwq7hGi2nFL1LeA3EUl+q2LQx16MISgJ0+z7dnmgvP9QtIleuETGOiOH1RcIw== + dependencies: + "@babel/highlight" "^7.10.4" + "@babel/code-frame@^7.0.0", "@babel/code-frame@^7.22.10", "@babel/code-frame@^7.22.5": version "7.22.13" resolved "https://registry.npmjs.org/@babel/code-frame/-/code-frame-7.22.13.tgz" @@ -207,19 +214,12 @@ "@babel/highlight" "^7.22.13" chalk "^2.4.2" -"@babel/code-frame@7.12.11": - version "7.12.11" - resolved "https://registry.npmjs.org/@babel/code-frame/-/code-frame-7.12.11.tgz" - integrity sha512-Zt1yodBx1UcyiePMSkWnU4hPqhwq7hGi2nFL1LeA3EUl+q2LQx16MISgJ0+z7dnmgvP9QtIleuETGOiOH1RcIw== - dependencies: - "@babel/highlight" "^7.10.4" - "@babel/compat-data@^7.22.9": version "7.22.9" resolved "https://registry.npmjs.org/@babel/compat-data/-/compat-data-7.22.9.tgz" integrity sha512-5UamI7xkUcJ3i9qVDS+KFDEK8/7oJ55/sJMB1Ge7IEapr7KfdfV/HErR+koZwOfd+SgtFKOKRhRakdg++DcJpQ== -"@babel/core@^7.0.0", "@babel/core@^7.7.5": +"@babel/core@^7.7.5": version "7.22.11" resolved "https://registry.npmjs.org/@babel/core/-/core-7.22.11.tgz" integrity sha512-lh7RJrtPdhibbxndr6/xx0w8+CVlY5FJZiaSz908Fpy+G0xkBFTvwLcKJFF4PJxVfGhVWNebikpWGnOoC71juQ== @@ -347,7 +347,9 @@ js-tokens "^4.0.0" "@babel/parser@^7.22.11", "@babel/parser@^7.22.5": - version "7.22.14" + version "7.23.0" + resolved "https://registry.yarnpkg.com/@babel/parser/-/parser-7.23.0.tgz#da950e622420bf96ca0d0f2909cdddac3acd8719" + integrity sha512-vvPKKdMemU85V9WE/l5wZEmImpCtLqbnTvqDS2U1fJ96KrxoW7KrXhNsNCblQlg8Ck4b85yxdTyelsMUgFUXiw== "@babel/runtime@^7.10.5", "@babel/runtime@^7.21.0": version "7.22.11" @@ -515,14 +517,6 @@ resolved "https://registry.npmjs.org/@jridgewell/sourcemap-codec/-/sourcemap-codec-1.4.15.tgz" integrity sha512-eF2rxCRulEKXHTRiDrDy6erMYWqNw4LPdQ8UQA4huuxaQsVeRPFl2oM8oDGxMFhJUWZf9McpLtJasDDZb/Bpeg== -"@jridgewell/trace-mapping@^0.3.17", "@jridgewell/trace-mapping@^0.3.9": - version "0.3.19" - resolved "https://registry.npmjs.org/@jridgewell/trace-mapping/-/trace-mapping-0.3.19.tgz" - integrity sha512-kf37QtfW+Hwx/buWGMPcR60iF9ziHa6r/CZJIHbmcm4+0qrXiVdxegAH0F6yddEVQ7zdkjcGCgCzUu+BcbhQxw== - dependencies: - "@jridgewell/resolve-uri" "^3.1.0" - "@jridgewell/sourcemap-codec" "^1.4.14" - "@jridgewell/trace-mapping@0.3.9": version "0.3.9" resolved "https://registry.npmjs.org/@jridgewell/trace-mapping/-/trace-mapping-0.3.9.tgz" @@ -531,6 +525,14 @@ "@jridgewell/resolve-uri" "^3.0.3" "@jridgewell/sourcemap-codec" "^1.4.10" +"@jridgewell/trace-mapping@^0.3.17", "@jridgewell/trace-mapping@^0.3.9": + version "0.3.19" + resolved "https://registry.npmjs.org/@jridgewell/trace-mapping/-/trace-mapping-0.3.19.tgz" + integrity sha512-kf37QtfW+Hwx/buWGMPcR60iF9ziHa6r/CZJIHbmcm4+0qrXiVdxegAH0F6yddEVQ7zdkjcGCgCzUu+BcbhQxw== + dependencies: + "@jridgewell/resolve-uri" "^3.1.0" + "@jridgewell/sourcemap-codec" "^1.4.14" + "@ladjs/graceful@^1.0.5": version "1.1.5" resolved "https://registry.npmjs.org/@ladjs/graceful/-/graceful-1.1.5.tgz" @@ -592,7 +594,7 @@ "@nodelib/fs.stat" "2.0.5" run-parallel "^1.1.9" -"@nodelib/fs.stat@^2.0.2", "@nodelib/fs.stat@2.0.5": +"@nodelib/fs.stat@2.0.5", "@nodelib/fs.stat@^2.0.2": version "2.0.5" resolved "https://registry.npmjs.org/@nodelib/fs.stat/-/fs.stat-2.0.5.tgz" integrity sha512-RkhPPp2zrqDAQA/2jNhnztcPAlv64XdhIp7a7454A5ovI7Bukxgt7MX7udwAu3zg1DcpPU0rz3VV1SeaqvY4+A== @@ -691,7 +693,9 @@ "@types/node" "*" "@types/bcryptjs@^2.4.2": - version "2.4.3" + version "2.4.4" + resolved "https://registry.yarnpkg.com/@types/bcryptjs/-/bcryptjs-2.4.4.tgz#cd3c4c007f600f1d21db09c9bd4ced8b49d04670" + integrity sha512-9wlJI7k5gRyJEC4yrV7DubzNQFTPiykYxUA6lBtsk5NlOfW9oWLJ1HdIA4YtE+6C3i3mTpDQQEosJ2rVZfBWnw== "@types/bluebird@*": version "3.5.38" @@ -1027,16 +1031,7 @@ pg-protocol "^1.2.0" pg-types "^2.2.0" -"@types/pg@^8.0.0": - version "8.10.2" - resolved "https://registry.npmjs.org/@types/pg/-/pg-8.10.2.tgz" - integrity sha512-MKFs9P6nJ+LAeHLU3V0cODEOgyThJ3OAnmOlsZsxux6sfQs3HRXR5bBn7xG5DjckEFhTAxsXi7k7cd0pCMxpJw== - dependencies: - "@types/node" "*" - pg-protocol "*" - pg-types "^4.0.1" - -"@types/pg@^8.6.1": +"@types/pg@^8.0.0", "@types/pg@^8.6.1": version "8.10.2" resolved "https://registry.npmjs.org/@types/pg/-/pg-8.10.2.tgz" integrity sha512-MKFs9P6nJ+LAeHLU3V0cODEOgyThJ3OAnmOlsZsxux6sfQs3HRXR5bBn7xG5DjckEFhTAxsXi7k7cd0pCMxpJw== @@ -1047,6 +1042,8 @@ "@types/qs@*": version "6.9.8" + resolved "https://registry.yarnpkg.com/@types/qs/-/qs-6.9.8.tgz#f2a7de3c107b89b441e071d5472e6b726b4adf45" + integrity sha512-u95svzDlTysU5xecFNTgfFG5RUWu1A9P0VzgpcIiGZA9iraHOdSzcxMxQ55DyeRaGCSxQi7LxXDI4rzq/MYfdg== "@types/range-parser@*": version "1.2.4" @@ -1113,6 +1110,8 @@ "@types/uuid@^3.4.9": version "3.4.11" + resolved "https://registry.yarnpkg.com/@types/uuid/-/uuid-3.4.11.tgz#201bf1ca5756537886931aac6672c21c1a06f98a" + integrity sha512-CJNkbEu4IdVuBMRVaNC2GjASgJK7ziqDlVXWuJ1pvhOLADl7nzxhTKjHRdOmo2SuXuygcWBmzgYgn9foTX0UiA== "@types/validator@^13.7.0", "@types/validator@^13.7.10": version "13.11.1" @@ -1128,17 +1127,23 @@ "@types/xml-crypto@^1.4.2": version "1.4.3" + resolved "https://registry.yarnpkg.com/@types/xml-crypto/-/xml-crypto-1.4.3.tgz#852db00733c4fb68310bba6088dadb3e49c6238f" + integrity sha512-pnvKYb7vUsUIMc+C6JM/j779YWQgOMcwjnqHJ9cdaWXwWEBE1hAqthzeszRx62V5RWMvS+XS9w9tXMOYyUc8zg== dependencies: "@types/node" "*" xpath "0.0.27" "@types/xml-encryption@^1.2.1": version "1.2.2" + resolved "https://registry.yarnpkg.com/@types/xml-encryption/-/xml-encryption-1.2.2.tgz#202bc30826d644d35eb96455bb23a982a5dd04b2" + integrity sha512-UeuYOqW3ZzUQfwb/mb3GNZ2/DlVdh5mjJNmB/yFXgQr8/pwlVJ9I2w+AHPfRDzLshe7YpgUB4T1//qgbk6U87Q== dependencies: "@types/node" "*" "@types/xml2js@^0.4.11", "@types/xml2js@^0.4.8": version "0.4.12" + resolved "https://registry.yarnpkg.com/@types/xml2js/-/xml2js-0.4.12.tgz#d9aae03295476fd5cbc74e0b572816208dbec6d1" + integrity sha512-CZPpQKBZ8db66EP5hCjwvYrLThgZvnyZrPXK2W+UI1oOaWezGt34iOaUCX4Jah2X8+rQqjvl9VKEIT8TR1I0rA== dependencies: "@types/node" "*" @@ -1168,7 +1173,7 @@ eslint-scope "^5.1.1" eslint-utils "^3.0.0" -"@typescript-eslint/parser@^4.0.0", "@typescript-eslint/parser@^4.31.2": +"@typescript-eslint/parser@^4.31.2": version "4.33.0" resolved "https://registry.npmjs.org/@typescript-eslint/parser/-/parser-4.33.0.tgz" integrity sha512-ZohdsbXadjGBSK0/r+d87X0SBmKzOq4/S5nzK6SBgJspFo9/CUDJ7hjayuze+JK7CZQLDMroqytp7pOcFKTxZA== @@ -1234,7 +1239,7 @@ 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version "3.1.0" @@ -8511,7 +8410,7 @@ typedarray-to-buffer@^3.1.5: dependencies: is-typedarray "^1.0.0" -typescript@^4.7.2, typescript@>=2.7, "typescript@>=2.8.0 || >= 3.2.0-dev || >= 3.3.0-dev || >= 3.4.0-dev || >= 3.5.0-dev || >= 3.6.0-dev || >= 3.6.0-beta || >= 3.7.0-dev || >= 3.7.0-beta": +typescript@^4.7.2: version "4.9.5" resolved "https://registry.npmjs.org/typescript/-/typescript-4.9.5.tgz" integrity sha512-1FXk9E2Hm+QzZQ7z+McJiHL4NW1F2EzMu9Nq9i3zAaGqibafqYwCVU6WyWAuyQRRzOlxou8xZSyXLEN8oKj24g== @@ -8526,7 +8425,7 @@ uid-generator@^2.0.0: resolved "https://registry.npmjs.org/uid-generator/-/uid-generator-2.0.0.tgz" integrity sha512-XLRw2UyViQueSbd3dOHkswrg4gA4YuhibKzkFiPkilo6cdKEQqOX3K/Yu6Z2WXVMK+npfMNlSSufVSUifbXoOQ== -uid-safe@~2.1.5, uid-safe@2.1.5: +uid-safe@2.1.5, uid-safe@~2.1.5: version "2.1.5" resolved "https://registry.npmjs.org/uid-safe/-/uid-safe-2.1.5.tgz" integrity sha512-KPHm4VL5dDXKz01UuEd88Df+KzynaohSL9fBh096KWAxSKZQDI2uBrVqtvRM4rwrIrRRKsdLNML/lnaaVSRioA== @@ 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webpack-bundle-analyzer@^4.4.0: version "4.9.1" + resolved "https://registry.yarnpkg.com/webpack-bundle-analyzer/-/webpack-bundle-analyzer-4.9.1.tgz#d00bbf3f17500c10985084f22f1a2bf45cb2f09d" + integrity sha512-jnd6EoYrf9yMxCyYDPj8eutJvtjQNp8PHmni/e/ulydHBWhT5J3menXt3HEkScsu9YqMAcG4CfFjs3rj5pVU1w== dependencies: "@discoveryjs/json-ext" "0.5.7" acorn "^8.0.4" @@ -8821,7 +8722,7 @@ webpack-merge@^5.7.3: clone-deep "^4.0.1" wildcard "^2.0.0" -webpack-sources@*, webpack-sources@^3.2.3: +webpack-sources@^3.2.3: version "3.2.3" resolved "https://registry.npmjs.org/webpack-sources/-/webpack-sources-3.2.3.tgz" integrity sha512-/DyMEOrDgLKKIG0fmvtz+4dUX/3Ghozwgm6iPp8KRhvn+eQf9+Q7GWxVNMk3+uCPWfdXYC4ExGBckIXdFEfH1w== @@ -8831,7 +8732,7 @@ webpack-virtual-modules@^0.4.2: resolved "https://registry.npmjs.org/webpack-virtual-modules/-/webpack-virtual-modules-0.4.6.tgz" integrity sha512-5tyDlKLqPfMqjT3Q9TAqf2YqjwmnUleZwzJi1A5qXnlBCdj2AtOJ6wAWdglTIDOPgOiOrXeBeFcsQ8+aGQ6QbA== -"webpack@^2.0.0 || ^3.0.0 || ^4.0.0 || ^5.0.0", "webpack@^3.0.0 || ^4.1.0 || ^5.0.0-0", "webpack@^4.0.0 || ^5.0.0", "webpack@^4.1.0 || ^5.0.0-0", "webpack@^4.27.0 || ^5.0.0", "webpack@^4.37.0 || ^5.0.0", webpack@^5.0.0, webpack@^5.1.0, webpack@^5.20.0, webpack@^5.54.0: +webpack@^5.54.0: version "5.88.2" resolved "https://registry.npmjs.org/webpack/-/webpack-5.88.2.tgz" integrity sha512-JmcgNZ1iKj+aiR0OvTYtWQqJwq37Pf683dY9bVORwVbUrDhLhdn/PlO2sHsFHPkj7sHNQF3JwaAkp49V+Sq1tQ== @@ -8861,7 +8762,7 @@ webpack-virtual-modules@^0.4.2: watchpack "^2.4.0" webpack-sources "^3.2.3" -websocket-driver@^0.7.4, websocket-driver@>=0.5.1: +websocket-driver@>=0.5.1, websocket-driver@^0.7.4: version "0.7.4" resolved "https://registry.npmjs.org/websocket-driver/-/websocket-driver-0.7.4.tgz" integrity sha512-b17KeDIQVjvb0ssuSDF2cYXSg2iztliJ4B9WdsuB6J952qCPKmnVq4DyW5motImXHDC1cBT/1UezrJVsKw5zjg== @@ -8930,6 +8831,13 @@ which-typed-array@^1.1.11, which-typed-array@^1.1.2: gopd "^1.0.1" has-tostringtag "^1.0.0" +which@2.0.2, which@^2.0.1: + version "2.0.2" + resolved "https://registry.npmjs.org/which/-/which-2.0.2.tgz" + integrity sha512-BLI3Tl1TW3Pvl70l3yq3Y64i+awpwXqsGBYWkkqMtnbXgrMD+yj7rhW0kuEDxzJaYXGjEW5ogapKNMEKNMjibA== + dependencies: + isexe "^2.0.0" + which@^1.2.9: version "1.3.1" resolved "https://registry.npmjs.org/which/-/which-1.3.1.tgz" @@ -8937,13 +8845,6 @@ which@^1.2.9: dependencies: isexe "^2.0.0" -which@^2.0.1, which@2.0.2: - version "2.0.2" - resolved "https://registry.npmjs.org/which/-/which-2.0.2.tgz" - integrity sha512-BLI3Tl1TW3Pvl70l3yq3Y64i+awpwXqsGBYWkkqMtnbXgrMD+yj7rhW0kuEDxzJaYXGjEW5ogapKNMEKNMjibA== - dependencies: - isexe "^2.0.0" - wildcard@^2.0.0: version "2.0.1" resolved "https://registry.npmjs.org/wildcard/-/wildcard-2.0.1.tgz" @@ -8958,7 +8859,7 @@ winston-transport@^4.5.0: readable-stream "^3.6.0" triple-beam "^1.3.0" -winston@^3.3.3, "winston@>=3.x <4": +winston@^3.3.3: version "3.10.0" resolved "https://registry.npmjs.org/winston/-/winston-3.10.0.tgz" integrity sha512-nT6SIDaE9B7ZRO0u3UvdrimG0HkB7dSTAgInQnNR2SOPJ4bvq5q79+pXLftKmP52lJGW15+H5MCK0nM9D3KB/g== @@ -9034,21 +8935,16 @@ write-file-atomic@^5.0.1: imurmurhash "^0.1.4" signal-exit "^4.0.1" -ws@^7.3.1: - version "7.5.9" - resolved "https://registry.npmjs.org/ws/-/ws-7.5.9.tgz" - integrity sha512-F+P9Jil7UiSKSkppIiD94dN07AwvFixvLIj1Og1Rl9GGMuNipJnV9JzjD6XuqmAeiswGvUmNLjr5cFuXwNS77Q== +"ws@>= 2.2.3", ws@^8.11.0, ws@^8.13.0, ws@^8.9.0: + version "8.13.0" + resolved "https://registry.npmjs.org/ws/-/ws-8.13.0.tgz" + integrity sha512-x9vcZYTrFPC7aSIbj7sRCYo7L/Xb8Iy+pW0ng0wt2vCJv7M9HOMy0UoN3rr+IFC7hb7vXoqS+P9ktyLLLhO+LA== -ws@^7.4.6: +ws@^7.3.1, ws@^7.4.6: version "7.5.9" resolved "https://registry.npmjs.org/ws/-/ws-7.5.9.tgz" integrity sha512-F+P9Jil7UiSKSkppIiD94dN07AwvFixvLIj1Og1Rl9GGMuNipJnV9JzjD6XuqmAeiswGvUmNLjr5cFuXwNS77Q== -ws@^8.11.0, ws@^8.13.0, ws@^8.9.0, "ws@>= 2.2.3": - version "8.13.0" - resolved "https://registry.npmjs.org/ws/-/ws-8.13.0.tgz" - integrity sha512-x9vcZYTrFPC7aSIbj7sRCYo7L/Xb8Iy+pW0ng0wt2vCJv7M9HOMy0UoN3rr+IFC7hb7vXoqS+P9ktyLLLhO+LA== - x-xss-protection@1.3.0: version "1.3.0" resolved "https://registry.npmjs.org/x-xss-protection/-/x-xss-protection-1.3.0.tgz" @@ -9096,11 +8992,6 @@ xml-name-validator@^3.0.0: resolved "https://registry.npmjs.org/xml-name-validator/-/xml-name-validator-3.0.0.tgz" integrity sha512-A5CUptxDsvxKJEU3yO6DuWBSJz/qizqzJKOMIfUJHETbBw/sFaDxgd6fxm1ewUaM0jZ444Fc5vC5ROYurg/4Pw== -xml@^1.0.1: - version "1.0.1" - resolved "https://registry.npmjs.org/xml/-/xml-1.0.1.tgz" - integrity sha512-huCv9IH9Tcf95zuYCsQraZtWnJvBtLVE0QHMOs8bWyZAFZNDcYjsPq1nEx8jKA9y+Beo9v+7OBPRisQTjinQMw== - xml2js@^0.5.0: version "0.5.0" resolved "https://registry.npmjs.org/xml2js/-/xml2js-0.5.0.tgz" @@ -9109,6 +9000,11 @@ xml2js@^0.5.0: sax ">=0.6.0" xmlbuilder "~11.0.0" +xml@^1.0.1: + version "1.0.1" + resolved "https://registry.npmjs.org/xml/-/xml-1.0.1.tgz" + integrity sha512-huCv9IH9Tcf95zuYCsQraZtWnJvBtLVE0QHMOs8bWyZAFZNDcYjsPq1nEx8jKA9y+Beo9v+7OBPRisQTjinQMw== + xmlbuilder@^15.1.1: version "15.1.1" resolved "https://registry.npmjs.org/xmlbuilder/-/xmlbuilder-15.1.1.tgz" @@ -9169,6 +9065,11 @@ yaml@^1.10.0, yaml@^1.10.2: resolved "https://registry.npmjs.org/yaml/-/yaml-1.10.2.tgz" integrity sha512-r3vXyErRCYJ7wg28yvBY5VSoAF8ZvlcW9/BwUzEtUsjvX/DKs24dIkuwjtuprwJJHsbyUbLApepYTR1BN4uHrg== +yargs-parser@20.2.4: + version "20.2.4" + resolved "https://registry.npmjs.org/yargs-parser/-/yargs-parser-20.2.4.tgz" + integrity sha512-WOkpgNhPTlE73h4VFAFsOnomJVaovO8VqLDzy5saChRBFQFBoMYirowyW+Q9HB4HFF4Z7VZTiG3iSzJJA29yRA== + yargs-parser@^18.1.2: version "18.1.3" resolved "https://registry.npmjs.org/yargs-parser/-/yargs-parser-18.1.3.tgz" @@ -9187,11 +9088,6 @@ yargs-parser@^21.1.1: resolved "https://registry.npmjs.org/yargs-parser/-/yargs-parser-21.1.1.tgz" integrity sha512-tVpsJW7DdjecAiFpbIB1e3qxIQsE6NoPc5/eTdrbbIC4h0LVsWhnoa3g+m2HclBIujHzsxZ4VJVA+GUuc2/LBw== -yargs-parser@20.2.4: - version "20.2.4" - resolved "https://registry.npmjs.org/yargs-parser/-/yargs-parser-20.2.4.tgz" - integrity sha512-WOkpgNhPTlE73h4VFAFsOnomJVaovO8VqLDzy5saChRBFQFBoMYirowyW+Q9HB4HFF4Z7VZTiG3iSzJJA29yRA== - yargs-unparser@2.0.0: version "2.0.0" resolved "https://registry.npmjs.org/yargs-unparser/-/yargs-unparser-2.0.0.tgz" @@ -9202,6 +9098,19 @@ yargs-unparser@2.0.0: flat "^5.0.2" is-plain-obj "^2.1.0" +yargs@16.2.0, yargs@^16.0.0, yargs@^16.1.0, yargs@~16.2.0: + version "16.2.0" + resolved "https://registry.npmjs.org/yargs/-/yargs-16.2.0.tgz" + integrity sha512-D1mvvtDG0L5ft/jGWkLpG1+m0eQxOfaBvTNELraWj22wSVUMWxZUvYgJYcKh6jGGIkJFhH4IZPQhR4TKpc8mBw== + dependencies: + cliui "^7.0.2" + escalade "^3.1.1" + get-caller-file "^2.0.5" + require-directory "^2.1.1" + string-width "^4.2.0" + y18n "^5.0.5" + yargs-parser "^20.2.2" + yargs@^15.0.2: version "15.4.1" resolved "https://registry.npmjs.org/yargs/-/yargs-15.4.1.tgz" @@ -9219,19 +9128,6 @@ yargs@^15.0.2: y18n "^4.0.0" yargs-parser "^18.1.2" -yargs@^16.0.0, yargs@^16.1.0, yargs@~16.2.0, yargs@16.2.0: - version "16.2.0" - resolved "https://registry.npmjs.org/yargs/-/yargs-16.2.0.tgz" - integrity sha512-D1mvvtDG0L5ft/jGWkLpG1+m0eQxOfaBvTNELraWj22wSVUMWxZUvYgJYcKh6jGGIkJFhH4IZPQhR4TKpc8mBw== - dependencies: - cliui "^7.0.2" - escalade "^3.1.1" - get-caller-file "^2.0.5" - require-directory "^2.1.1" - string-width "^4.2.0" - y18n "^5.0.5" - yargs-parser "^20.2.2" - yargs@^17.7.2: version "17.7.2" resolved "https://registry.npmjs.org/yargs/-/yargs-17.7.2.tgz" From c6237955eb92609dc78cf771673863851eaad826 Mon Sep 17 00:00:00 2001 From: Jeren Browning Date: Tue, 3 Oct 2023 14:27:26 -0600 Subject: [PATCH 02/16] enable time queries --- .../deeplynx/src/redis_graph/loader.rs | 53 ++++++++++++++++--- .../data_warehouse/data/graph_routes.ts | 15 ++++++ 2 files changed, 61 insertions(+), 7 deletions(-) diff --git a/NodeLibraries/deeplynx/src/redis_graph/loader.rs b/NodeLibraries/deeplynx/src/redis_graph/loader.rs index c4c2ea9a1..d3f318d45 100644 --- a/NodeLibraries/deeplynx/src/redis_graph/loader.rs +++ b/NodeLibraries/deeplynx/src/redis_graph/loader.rs @@ -7,6 +7,7 @@ use serde::{Deserialize, Serialize}; use serde_json::Value; use sqlx::{PgPool, Pool, Postgres, Row}; use std::collections::HashMap; +use futures_util::stream::BoxStream; use tokio_util::compat::FuturesAsyncReadCompatExt; #[derive(Clone)] @@ -43,7 +44,6 @@ impl RedisGraphLoader { /// to quickly load the data from Postgres into RedisGraph. Due to how we have to format the RedisGraph /// bulkloader, we do tend to max out memory with how we read records into it and the fact we have /// to keep track of all the new ids for the nodes - // TODO: right now generate only does current graph, need to actually make it work with timestamps pub async fn generate_redis_graph( &self, container_id: u64, @@ -52,13 +52,16 @@ impl RedisGraphLoader { ) -> Result { let mut connection = self.db.acquire().await?; - let key: String = format!("{}-{}", container_id, timestamp.clone().unwrap_or("default".to_string())); + let timestamp_val = timestamp.clone().unwrap_or("default".to_string()); + let key: String = format!("{}-{}", container_id, timestamp_val); self.verify_redis_key(key.clone()).await?; - let stream = connection + let stream; + if timestamp_val == "default" { + stream = connection .copy_out_raw( - format!( - r#" + format!( + r#" COPY (SELECT q.*, ROW_NUMBER () OVER(ORDER BY metatype_id) as new_id FROM (SELECT DISTINCT ON (nodes.id) nodes.id, nodes.container_id, nodes.metatype_id, @@ -83,10 +86,46 @@ impl RedisGraphLoader { ORDER BY nodes.id, nodes.created_at) q ORDER BY q.metatype_id) TO STDOUT WITH (FORMAT csv, HEADER true) ; "# - ) - .as_str(), + ) + .as_str(), ) .await?; + } else { + stream = connection + .copy_out_raw( + format!( + r#" + COPY (SELECT q.*, ROW_NUMBER () OVER(ORDER BY metatype_id) as new_id FROM (SELECT DISTINCT ON (nodes.id) nodes.id, + nodes.container_id, + nodes.metatype_id, + nodes.data_source_id, + nodes.import_data_id, + nodes.data_staging_id, + nodes.type_mapping_transformation_id, + nodes.original_data_id, + nodes.properties, + nodes.metadata_properties, + nodes.metadata, + nodes.created_at, + nodes.modified_at, + nodes.deleted_at, + nodes.created_by, + nodes.modified_by, + metatypes.name AS metatype_name, + metatypes.uuid AS metatype_uuid + FROM (nodes + LEFT JOIN metatypes ON ((metatypes.id = nodes.metatype_id))) + WHERE (nodes.container_id = {container_id}) + AND nodes.created_at <= '{timestamp_val}' + AND (nodes.deleted_at > '{timestamp_val}' OR nodes.deleted_at IS NULL) + ORDER BY nodes.id, nodes.created_at) q ORDER BY q.metatype_id) +TO STDOUT WITH (FORMAT csv, HEADER true) ; + "# + ) + .as_str(), + ) + .await?; + } let async_reader = stream // we have to convert the error so that we can turn it into an AsyncReader diff --git a/src/http_server/routes/data_warehouse/data/graph_routes.ts b/src/http_server/routes/data_warehouse/data/graph_routes.ts index 97843fc72..56e2b651f 100644 --- a/src/http_server/routes/data_warehouse/data/graph_routes.ts +++ b/src/http_server/routes/data_warehouse/data/graph_routes.ts @@ -18,6 +18,7 @@ import Config from '../../../../services/config'; import Result from '../../../../common_classes/result'; import ContainerRepository from '../../../../data_access_layer/repositories/data_warehouse/ontology/container_respository'; import RedisGraphService from '../../../../services/cache/redis_graph_loader'; +import {parseISO} from 'date-fns'; export default class GraphRoutes { public static mount(app: Application, middleware: any[]) { @@ -193,6 +194,20 @@ function queryRedisGraph(req: Request, res: Response, next: NextFunction) { if (req.container) { let timestamp; if (typeof req.query.timestamp !== 'undefined' && (req.query.timestamp as string) !== '') { + const date_conversion_format = 'yyyy-MM-ddTHH:mm:ss.SSSZ'; + const convertedDate = parseISO(req.query.timestamp.toString()); + + // if conversion is unsuccessful, return from the call with an explanation + if (isNaN(convertedDate.getTime())) { + return res + .status(400) + .json( + 'The timestamp query parameter was not provided a valid date input. ' + + 'Please provide an input in the format ' + + date_conversion_format, + ); + } + timestamp = req.query.timestamp.toString(); } From e1ed719ad40e639eac4fd67e630faff71a163e62 Mon Sep 17 00:00:00 2001 From: Jeren Browning Date: Tue, 3 Oct 2023 15:38:19 -0600 Subject: [PATCH 03/16] Extend edges --- .../deeplynx/src/redis_graph/loader.rs | 81 ++++++++++++++++--- 1 file changed, 72 insertions(+), 9 deletions(-) diff --git a/NodeLibraries/deeplynx/src/redis_graph/loader.rs b/NodeLibraries/deeplynx/src/redis_graph/loader.rs index d3f318d45..2d35026b8 100644 --- a/NodeLibraries/deeplynx/src/redis_graph/loader.rs +++ b/NodeLibraries/deeplynx/src/redis_graph/loader.rs @@ -228,10 +228,12 @@ TO STDOUT WITH (FORMAT csv, HEADER true) ; let mut connection = self.db.acquire().await?; // now let's handle the edges TODO: move this into its own functions - let stream = connection - .copy_out_raw( - format!( - r#" + let stream; + if timestamp_val == "default" { + stream = connection + .copy_out_raw( + format!( + r#" COPY (SELECT q.* FROM (SELECT DISTINCT ON (edges.origin_id, edges.destination_id, edges.data_source_id, edges.relationship_pair_id) edges.id, edges.container_id, edges.relationship_pair_id, @@ -269,12 +271,61 @@ TO STDOUT WITH (FORMAT csv, HEADER true) ; WHERE (edges.deleted_at IS NULL) AND (edges.container_id = {container_id}::bigint) ORDER BY edges.origin_id, edges.destination_id, edges.data_source_id, edges.relationship_pair_id, edges.id, edges.created_at DESC) as q ORDER BY metatype_relationship_name) TO STDOUT WITH (FORMAT csv, HEADER true);"# - ) - .as_str(), ) - .await?; + .as_str(), + ) + .await?; + } else { + stream = connection + .copy_out_raw( + format!( + r#" + COPY (SELECT q.* FROM (SELECT DISTINCT ON (edges.origin_id, edges.destination_id, edges.data_source_id, edges.relationship_pair_id) edges.id, + edges.container_id, + edges.relationship_pair_id, + edges.data_source_id, + edges.import_data_id, + edges.data_staging_id, + edges.type_mapping_transformation_id, + edges.origin_id, + edges.origin_original_id, + edges.origin_data_source_id, + edges.origin_metatype_id, + origin.uuid AS origin_metatype_uuid, + edges.destination_id, + edges.destination_original_id, + edges.destination_data_source_id, + edges.destination_metatype_id, + destination.uuid AS destination_metatype_uuid, + edges.properties, + edges.metadata_properties, + edges.metadata, + edges.created_at, + edges.modified_at, + edges.deleted_at, + edges.created_by, + edges.modified_by, + metatype_relationship_pairs.relationship_id, + metatype_relationships.name AS metatype_relationship_name, + metatype_relationships.uuid AS metatype_relationship_uuid, + metatype_relationship_pairs.uuid AS metatype_relationship_pair_uuid + FROM ((((edges + LEFT JOIN metatype_relationship_pairs ON ((edges.relationship_pair_id = metatype_relationship_pairs.id))) + LEFT JOIN metatype_relationships ON ((metatype_relationship_pairs.relationship_id = metatype_relationships.id))) + LEFT JOIN metatypes origin ON ((edges.origin_metatype_id = origin.id))) + LEFT JOIN metatypes destination ON ((edges.destination_metatype_id = destination.id))) + WHERE (edges.deleted_at IS NULL) AND (edges.container_id = {container_id}::bigint) + AND (edges.created_at <= '{timestamp_val}') + AND (edges.deleted_at > '{timestamp_val}' OR edges.deleted_at IS NULL) + ORDER BY edges.origin_id, edges.destination_id, edges.data_source_id, edges.relationship_pair_id, edges.id, edges.created_at DESC) as q ORDER BY metatype_relationship_name) +TO STDOUT WITH (FORMAT csv, HEADER true);"# + ) + .as_str(), + ) + .await?; + } - let async_reader = stream + let async_reader = stream // we have to convert the error so that we can turn it into an AsyncReader .map_err(|e| std::io::Error::new(std::io::ErrorKind::Other, e)) .into_async_read(); @@ -679,13 +730,16 @@ impl Edge { &self, metatype_relationship_properties: Vec, ) -> (Vec, Vec) { - let property_len: u32 = metatype_relationship_properties.len() as u32 + 8; + let property_len: u32 = metatype_relationship_properties.len() as u32 + 11; let mut property_names: Vec = vec![]; let mut property_names_raw: Vec = vec![]; property_names.extend("_deeplynx_id\0".as_bytes()); property_names.extend("_data_source_id\0".as_bytes()); property_names.extend("_container_id\0".as_bytes()); + property_names.extend("_origin_id\0".as_bytes()); + property_names.extend("_destination_id\0".as_bytes()); + property_names.extend("_relationship_pair_id\0".as_bytes()); property_names.extend("_metadata_properties\0".as_bytes()); property_names.extend("_created_at\0".as_bytes()); property_names.extend("_created_by\0".as_bytes()); @@ -727,6 +781,15 @@ impl Edge { property_final.extend(4_i8.to_ne_bytes()); property_final.extend(self.container_id.to_ne_bytes()); + property_final.extend(4_i8.to_ne_bytes()); + property_final.extend(self.origin_id.to_ne_bytes()); + + property_final.extend(4_i8.to_ne_bytes()); + property_final.extend(self.destination_id.to_ne_bytes()); + + property_final.extend(4_i8.to_ne_bytes()); + property_final.extend(self.relationship_pair_id.to_ne_bytes()); + property_final.extend(3_i8.to_ne_bytes()); property_final.extend(self.metadata_properties.as_bytes()); property_final.extend("\0".as_bytes()); From 81e219887e86fbee46d6bdf10d77d3e6a4df2269 Mon Sep 17 00:00:00 2001 From: Jeren Browning Date: Tue, 3 Oct 2023 15:53:52 -0600 Subject: [PATCH 04/16] floor timestamps to minute --- src/http_server/routes/data_warehouse/data/graph_routes.ts | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/src/http_server/routes/data_warehouse/data/graph_routes.ts b/src/http_server/routes/data_warehouse/data/graph_routes.ts index 56e2b651f..a8fb50b3b 100644 --- a/src/http_server/routes/data_warehouse/data/graph_routes.ts +++ b/src/http_server/routes/data_warehouse/data/graph_routes.ts @@ -209,6 +209,10 @@ function queryRedisGraph(req: Request, res: Response, next: NextFunction) { } timestamp = req.query.timestamp.toString(); + + // dates are rounded to the minute to avoid proliferation of graphs + const coef = 1000 * 60; + timestamp = new Date(Math.floor(new Date(timestamp).getTime() / coef) * coef).toISOString(); } const redisGraph = new RedisGraphService(); From 054cc03623153d26eb5fdb8c5ff39be05e5fea9c Mon Sep 17 00:00:00 2001 From: Jeren Browning Date: Mon, 9 Oct 2023 11:42:58 -0600 Subject: [PATCH 05/16] Enable merge for nodes --- AdminWebApp/src/api/types.ts | 13 +- .../components/etl/TransformationDialog.vue | 59 ++++++-- AdminWebApp/src/translations.ts | 15 +- .../data_warehouse/data/node_mapper.ts | 133 ++++++++++++++---- .../etl/type_transformation_mapper.ts | 11 +- .../migrations/072_transformation_merge.sql | 1 + .../data_warehouse/data/node_repository.ts | 12 +- src/data_processing/process.ts | 34 ++++- .../data_warehouse/etl/type_transformation.ts | 5 + .../data/graph_functions/node_functions.ts | 47 +++---- 10 files changed, 237 insertions(+), 93 deletions(-) create mode 100644 src/data_access_layer/migrations/072_transformation_merge.sql diff --git a/AdminWebApp/src/api/types.ts b/AdminWebApp/src/api/types.ts index f3fae3cc6..dd1a50164 100644 --- a/AdminWebApp/src/api/types.ts +++ b/AdminWebApp/src/api/types.ts @@ -94,12 +94,12 @@ export type MetatypeKeyT = { data_type: 'number' | 'number64' | 'float' | 'float64' | 'date' | 'string' | 'boolean' | 'enumeration' | 'file'; archived: boolean; validation: - | { - regex: string; - min: number; - max: number; - } - | undefined; + | { + regex: string; + min: number; + max: number; + } + | undefined; options: string[] | undefined; default_value: string | boolean | number | any[] | undefined; created_at?: string; @@ -504,6 +504,7 @@ export type TypeMappingTransformationT = { created_at_key?: string; created_at_format_string?: string; tags?: TypeMappingTransformationTagT[]; + merge?: boolean; }; export type TypeMappingTransformationPayloadT = { diff --git a/AdminWebApp/src/components/etl/TransformationDialog.vue b/AdminWebApp/src/components/etl/TransformationDialog.vue index ac4397d14..3ae4b9d34 100644 --- a/AdminWebApp/src/components/etl/TransformationDialog.vue +++ b/AdminWebApp/src/components/etl/TransformationDialog.vue @@ -209,6 +209,18 @@ + + + + + + + + + + + + + + +