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flyem-recipe-specs.yaml
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flyem-recipe-specs.yaml
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#
# This is a "recipe specs file", to be used with the 'publish-conda-stack' utility:
#
# https://github.com/ilastik/publish-conda-stack
#
# And installable via:
#
# conda install -c flyem-forge publish-conda-stack
#
shared-config:
master-conda-build-config: master-conda-build-config.yaml
repo-cache-dir: ./repo-cache # Relative to this yaml file's directory.
backend: conda
source-channels:
- flyem-forge
- conda-forge
destination-channel: flyem-forge
# These labels contain our old packages
# (before we upgraded to gcc7 and python 3.7)
#
# source-channels:
# - flyem-forge/label/ff201905
# - conda-forge/label/cf201901
# destination-channel: flyem-forge/label/ff201905
recipe-specs:
##
## This list will be processed in the order shown here,
## so keep it in sorted order, starting with the 'bottom'
## of the dependency stack and proceeding to the 'top' of the stack.
## That is, packages at the end of the list may depend on packages
## from the beginning of the list, but not vice-versa.
##
- name: assimp
recipe-repo: https://github.com/janelia-flyem/flyem-conda-recipes
tag: master
recipe-subdir: recipes/assimp
- name: glbinding
recipe-repo: https://github.com/janelia-flyem/flyem-conda-recipes
tag: master
recipe-subdir: recipes/glbinding
- name: confiddler
recipe-repo: https://github.com/stuarteberg/confiddler
tag: master
recipe-subdir: conda-recipe
- name: ilastikrag
#recipe-repo: https://github.com/stuarteberg/ilastikrag
recipe-repo: https://github.com/ilastik/ilastikrag
tag: main
recipe-subdir: conda-recipe
- name: neuprint-python
recipe-repo: https://github.com/connectome-neuprint/neuprint-python
tag: master
recipe-subdir: conda-recipe
- name: dvid-resource-manager
recipe-repo: https://github.com/janelia-flyem/dvid-resource-manager
tag: master
recipe-subdir: conda-recipe
- name: numpy-allocation-tracking
recipe-repo: https://github.com/stuarteberg/numpy-allocation-tracking
tag: master
recipe-subdir: conda-recipe
# conda-forge now has draco 1.3.4 and 1.3.5,
# but we aren't yet sure if those work.
# (Ting finds that their build segfaults for some reason, whereas our build works fine...)
- name: draco
recipe-repo: https://github.com/janelia-flyem/flyem-conda-recipes
tag: master
recipe-subdir: recipes/draco
- name: basholeveldb
recipe-repo: https://github.com/janelia-flyem/flyem-conda-recipes
tag: master
recipe-subdir: recipes/basholeveldb
- name: dvid-web-console
# From pre-built distribution
recipe-repo: https://github.com/janelia-flyem/flyem-conda-recipes
recipe-subdir: recipes/dvid-web-console
tag: master
- name: go
recipe-repo: https://github.com/janelia-flyem/flyem-conda-recipes
recipe-subdir: recipes/go
tag: master
- name: dvid
recipe-repo: https://github.com/janelia-flyem/dvid
recipe-subdir: scripts/conda-recipe
#tag: v1.0.0
tag: master
#tag: conda-recipe-fix
environment:
DVID_BACKENDS: badger basholeveldb filestore ngprecomputed
GOMAXPROCS: 2
DVID_CONDA_SKIP_TESTS: 1
- name: dvidutils
recipe-repo: https://github.com/janelia-flyem/dvidutils
tag: master
#tag: debug-build
recipe-subdir: conda-recipe
- name: libdvid-cpp
recipe-repo: https://github.com/janelia-flyem/libdvid-cpp
tag: master
#tag: address-sanitizer
recipe-subdir: conda-recipe
environment:
SKIP_LIBDVID_TESTS: 1
- name: lowtis
recipe-repo: https://github.com/janelia-flyem/lowtis
tag: master
recipe-subdir: conda-recipe
# FIXME: Switch to master fork when ready.
- name: fastfilters
recipe-repo: https://github.com/stuarteberg/fastfilters
tag: compiler-switch # Dominik's branch. See https://github.com/svenpeter42/fastfilters/pull/21
recipe-subdir: pkg/conda/fastfilters
- name: nifty
# FIXME: This is Dominik's branch, and not even the main one.
#tag: quickfix-conda-recipe # Dominik's quickfix branch, but rebased on master
#recipe-repo: https://github.com/constantinpape/nifty
#tag: v1.0.7
# Same as constantin's current master, but with conda-recipe fixes.
recipe-repo: https://github.com/stuarteberg/nifty
tag: v1.0.7.1
recipe-subdir: conda-recipe
- name: dvidtools
recipe-repo: https://github.com/janelia-flyem/flyem-conda-recipes
tag: master
recipe-subdir: recipes/dvidtools
- name: marktips
recipe-repo: https://github.com/janelia-flyem/marktips
tag: master
recipe-subdir: conda-recipe
- name: neuclease
recipe-repo: https://github.com/janelia-flyem/neuclease
tag: master
recipe-subdir: conda-recipe
conda-build-flags: --no-test
- name: flyem-snapshot
recipe-repo: https://github.com/janelia-flyem/flyem-snapshot
tag: master
recipe-subdir: conda-recipe
conda-build-flags: --no-test
- name: marching_cubes
recipe-repo: https://github.com/ilastik/marching_cubes
tag: 1a4aa175cd24c76ae50a49ee05be625678f2d384 # 2022-11-09
recipe-subdir: conda-recipe
- name: fq-mesh-simplification
recipe-repo: https://github.com/janelia-flyem/flyem-conda-recipes
tag: master
recipe-subdir: recipes/fq-mesh-simplification
- name: vol2mesh
recipe-repo: https://github.com/janelia-flyem/vol2mesh
tag: master
recipe-subdir: conda-recipe
- name: flyemflows
recipe-repo: https://github.com/janelia-flyem/flyemflows
tag: master
recipe-subdir: conda-recipe
conda-build-flags: --no-test
- name: ngspice
recipe-repo: https://github.com/stuarteberg/staged-recipes
tag: ngspice
recipe-subdir: recipes/ngspice
########################################################
### ###
### Deprecated/unused/broken recipes for FlyEM tools ###
### ###
########################################################
## FIXME: NeuTu recipe isn't updated yet.
# - name: neutu
# recipe-repo: https://github.com/janelia-flyem/NeuTu
# tag: flyem_release
# recipe-subdir: recipe-neutu
## FIXME: This should work, but I can't get it building currently.
# - name: neutube-python
# recipe-repo: https://github.com/janelia-flyem/NeuTu
# tag: try-anaconda-clang
# recipe-subdir: recipe-neutube-python
## FIXME: No recipe for pyzem yet.
# - name: pyzem
# recipe-repo: https://github.com/janelia-flyem/pyzem
# tag: master
# recipe-subdir: conda-recipe
## FIXME: No recipe for flypylib yet.
# - name: flypylib
# recipe-repo: https://github.com/janelia-flyem/flypylib
# tag: master
# recipe-subdir: conda-recipe
## FIXME: No recipe for libdvid-utils yet.
# - name: libdvid-utils
# recipe-repo: https://github.com/janelia-flyem/libdvid-utils
# tag: master
# recipe-subdir: conda-recipe
# - name: neuroproof
# recipe-repo: https://github.com/janelia-flyem/NeuroProof
# tag: master
# recipe-subdir: conda-recipe
#
# # Optional specs
# environment:
# SKIP_NEUROPROOF_TESTS: 0
# - name: dvidsparkservices
# recipe-repo: https://github.com/janelia-flyem/DVIDSparkServices
# tag: master
# recipe-subdir: conda-recipe
# conda-build-flags: --no-test
# - name: diced
# recipe-repo: https://github.com/janelia-flyem/diced
# tag: master
# recipe-subdir: conda-recipe
# - name: quilted
# recipe-repo: https://github.com/stuarteberg/quilted
# tag: master
# recipe-subdir: conda-recipe
# - name: logcollector
# recipe-repo: https://github.com/stuarteberg/logcollector
# tag: master
# recipe-subdir: conda-recipe
##############################################################
### ###
### Deprecated/unused/broken recipes for third-party tools ###
### ###
##############################################################
# - name: munkres
# recipe-repo: https://github.com/janelia-flyem/flyem-conda-recipes
# tag: master
# recipe-subdir: recipes/munkres
# - name: opencv-nopython
# recipe-repo: https://github.com/stuarteberg/opencv-feedstock
# tag: v2-nopython
# recipe-subdir: recipe
# - name: vtk-nopython
# recipe-repo: https://github.com/janelia-flyem/flyem-conda-recipes
# tag: master
# recipe-subdir: recipes/vtk-nopython
#
## This package provides a hacky way to make gsutil available from a python-3 environment.
## I'm not sures this hack even works any more in conda 4.6.
## Anyway, it should not be necessary once the following issue is closed:
## https://github.com/GoogleCloudPlatform/gsutil/issues/29
##
# - name: gsutil-env
# recipe-repo: https://github.com/janelia-flyem/flyem-conda-recipes
# tag: master
# recipe-subdir: recipes/gsutil-env
## FIXME: Our recipe for google-api-client hasn't been updated yet.
# - name: google-api-client
# recipe-repo: https://github.com/janelia-flyem/flyem-conda-recipes
# tag: master
# recipe-subdir: recipes/google-api-client
## FIXME: Can we just use the conda-forge package?
# - name: libjpeg-turbo-feedstock
# recipe-repo:
# tag:
# recipe-subdir: